PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G2677 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 374aa MW: 41081.6 Da PI: 9.8033 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 118 | 163 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+++ gR++k+c++rw++ Gh_A11G2677 118 RGHWRPAEDARLKELVAQYGPQNWNLIAEHLE-GRSGKSCRLRWFNQ 163 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56.3 | 7.2e-18 | 170 | 213 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++++eE+e+l+ a+k +G++ W++Iar ++ gRt++ +k++w+ Gh_A11G2677 170 RKAFSEEEEERLLTAHKVYGNK-WALIARLFP-GRTDNAVKNHWHV 213 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.601 | 113 | 164 | IPR017930 | Myb domain |
SMART | SM00717 | 8.5E-15 | 117 | 166 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.39E-28 | 118 | 211 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-16 | 118 | 163 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-26 | 119 | 171 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.81E-14 | 121 | 162 | No hit | No description |
PROSITE profile | PS51294 | 26.025 | 165 | 219 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-15 | 169 | 217 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-15 | 170 | 212 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 172 | 218 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.03E-12 | 172 | 212 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051782 | Biological Process | negative regulation of cell division | ||||
GO:0071367 | Biological Process | cellular response to brassinosteroid stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MSPLNLSDDF NCYNGGEVQE RNFLSLPSIF PHQIGRVAKN SEMGFQIPTS LMEQSNKSLN 60 FDPFQTRGAD GFVAAGDGKS GFLGVEKKGL SLNLSVENES NKNPGGSVKN GHTKLCSRGH 120 WRPAEDARLK ELVAQYGPQN WNLIAEHLEG RSGKSCRLRW FNQLDPRINR KAFSEEEEER 180 LLTAHKVYGN KWALIARLFP GRTDNAVKNH WHVIMARKHR EQSSIYRRRK PSSSTSSTSF 240 PKGLDLTVRN NASSDQSTIS CSNSTSTDLA LTPSSTKKGV PPHQNFTAFS GVHQKGEKVK 300 VGSSGNGDFG KYGSQQRPMG VVMGVDQYAN SSDSNSEISA TESVGTNRTN HSQTAIGDDK 360 INMHFIDFLG VGAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-34 | 118 | 218 | 7 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00516 | DAP | Transfer from AT5G17800 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017629501.1 | 0.0 | PREDICTED: transcription factor MYB76-like | ||||
TrEMBL | A0A1U8PXE1 | 0.0 | A0A1U8PXE1_GOSHI; transcription factor MYB76-like | ||||
STRING | Gorai.007G346400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1210 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 5e-73 | myb domain protein 105 |