PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A11G2639

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 1163aa MW: 129303 Da PI: 9.1002

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G2639	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.4	7.6e-09	45	80	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++ E e++++a +++G++ Wk++a+ + +R+++++ Gh_A11G2639 45 QWSKAEIEQFYKAYREHGKD-WKKVAAAVH-NRSAEMV 80 6***************99.*****.*9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.42E-9	41	88	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-4	42	90	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-5	45	81	IPR009057	Homeodomain-like
Pfam	PF00249	7.1E-8	45	80	IPR001005	SANT/Myb domain
CDD	cd00167	4.90E-6	46	80	No hit	No description
SMART	SM01135	7.1E-50	630	731	IPR033471	DIRP domain
Pfam	PF06584	1.9E-30	630	730	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1163 aa Download sequence Send to blast
MAPTRKSKSV NKQHSSVYEV SPDKNAGNSR KSKAKKKLTD KLGTQWSKAE IEQFYKAYRE 60 HGKDWKKVAA AVHNRSAEMV EALYSMNRAY LSLPDGTASV IGLIAMMTDH YNVLGVSDGE 120 RESNKPSDMS EKVQKRKRAK VHLESSKEDV VQPRSIASSE GCLSLLKRAG LNGILPHACR 180 KRTPRVPVSY SYRRDDTESF VPPTKRIKKS EVDDKDDEHV AALTLTGTLQ KGGSPSASRS 240 PYKITERRRP SPVRSYDRML PQSETSKAEL HDSSYECWME GGPGGIELVS GTYARDRGPL 300 MDMDGIGTVE VHRKGKNFYR KKIKVEESKN NLSDDGGEAC SGTEGIVGND LKRKVDMEIS 360 SAKKKLSPCT ERKRTKKHVL GDQSCALDAL LALANLSSVV PTSITESESS VKLKEDRTTI 420 EADDQSSVPE AASITHHRDK IKQPRPNKKV LNLLNGTEDD TSRKSTVSEP KQQQEPSNNP 480 RKRKQKPYVS KISNSEAPMD SRLRKHCDNE EMAKEEKKYL TKSKCASQQT SFKVPEGSVT 540 NNDPKMAGID SVVSTSQVPA PDPVSLPAKH QSRRKMNLKR ALLSAHKNSS VCTLKNQPNN 600 HSVPPFTPKE MLSSCLSSNL ARRWCCFEWF YSAIDYAWFA KREFVEYLNH VSLDHIPRLT 660 RVEWGVIRSS LGKPRRLSEH FLIEEREKLN QYRESVRQHY TQLRVGTREG LATDLAPPLC 720 VGQRVIAIHP KTREVHDGKV LTVDHDRCRV QFDSPDLGVE FVMDIDCMPL NPLENMPETL 780 KKQNLTFDQF SLAPRGSQGN RHLELGGPEV FTSCGCVENA TSSVNINPIK VDAKHTLLHG 840 KPALPHVVSA HQAACDQPLG IAHIQGREAD IRAMSELSHA LDKKEALLSE LRNTNDIIEI 900 QNGESCLNVS EHFKKHITTV LVQLKEASGQ ACGFHELLKE LASSALLNLR QRNTYPANPL 960 LPWQKHPTNL DFLGGLTSCS FDSSLISPEA GCVVGDIING SRLKARAMVD AAIKALSSMK 1020 EGEDAFKRIG EALNIVDKKQ ITSDISMPAI KSSEQNQVNG SVSITSKPMP TTGWAPNPRL 1080 QEASNKNEEQ VPLELITSCV STLLMIQRCT ERQFPPADVA QIIDSAITCL HPCCPQNLPI 1140 YREIQMCMGK IKTQILALIP TLI

Sequence ? help Back to Top

Protein Sequence Length: 1163 aa Download sequence Send to blast

MAPTRKSKSV NKQHSSVYEV SPDKNAGNSR KSKAKKKLTD KLGTQWSKAE IEQFYKAYRE  60
HGKDWKKVAA AVHNRSAEMV EALYSMNRAY LSLPDGTASV IGLIAMMTDH YNVLGVSDGE  120
RESNKPSDMS EKVQKRKRAK VHLESSKEDV VQPRSIASSE GCLSLLKRAG LNGILPHACR  180
KRTPRVPVSY SYRRDDTESF VPPTKRIKKS EVDDKDDEHV AALTLTGTLQ KGGSPSASRS  240
PYKITERRRP SPVRSYDRML PQSETSKAEL HDSSYECWME GGPGGIELVS GTYARDRGPL  300
MDMDGIGTVE VHRKGKNFYR KKIKVEESKN NLSDDGGEAC SGTEGIVGND LKRKVDMEIS  360
SAKKKLSPCT ERKRTKKHVL GDQSCALDAL LALANLSSVV PTSITESESS VKLKEDRTTI  420
EADDQSSVPE AASITHHRDK IKQPRPNKKV LNLLNGTEDD TSRKSTVSEP KQQQEPSNNP  480
RKRKQKPYVS KISNSEAPMD SRLRKHCDNE EMAKEEKKYL TKSKCASQQT SFKVPEGSVT  540
NNDPKMAGID SVVSTSQVPA PDPVSLPAKH QSRRKMNLKR ALLSAHKNSS VCTLKNQPNN  600
HSVPPFTPKE MLSSCLSSNL ARRWCCFEWF YSAIDYAWFA KREFVEYLNH VSLDHIPRLT  660
RVEWGVIRSS LGKPRRLSEH FLIEEREKLN QYRESVRQHY TQLRVGTREG LATDLAPPLC  720
VGQRVIAIHP KTREVHDGKV LTVDHDRCRV QFDSPDLGVE FVMDIDCMPL NPLENMPETL  780
KKQNLTFDQF SLAPRGSQGN RHLELGGPEV FTSCGCVENA TSSVNINPIK VDAKHTLLHG  840
KPALPHVVSA HQAACDQPLG IAHIQGREAD IRAMSELSHA LDKKEALLSE LRNTNDIIEI  900
QNGESCLNVS EHFKKHITTV LVQLKEASGQ ACGFHELLKE LASSALLNLR QRNTYPANPL  960
LPWQKHPTNL DFLGGLTSCS FDSSLISPEA GCVVGDIING SRLKARAMVD AAIKALSSMK  1020
EGEDAFKRIG EALNIVDKKQ ITSDISMPAI KSSEQNQVNG SVSITSKPMP TTGWAPNPRL  1080
QEASNKNEEQ VPLELITSCV STLLMIQRCT ERQFPPADVA QIIDSAITCL HPCCPQNLPI  1140
YREIQMCMGK IKTQILALIP TLI

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ908228	4e-67	DQ908228.1 Gossypium hirsutum clone LIB5327-014-A1-N1-B10_Gh288 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017627201.1	0.0	PREDICTED: protein ALWAYS EARLY 2-like isoform X1
TrEMBL	A0A1U8LY50	0.0	A0A1U8LY50_GOSHI; protein ALWAYS EARLY 2-like isoform X1
STRING	Gorai.007G342200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding