PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G2522
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 484aa    MW: 53778 Da    PI: 7.7881
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G2522genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-134592148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed  l+ +v+++G g+W+++ +  g+ R++k+c++rw ++l
      Gh_A11G2522 45 KGPWTAAEDAVLAGYVRRHGEGNWNAVRKNTGLARCGKSCRLRWANHL 92
                     79******************************************9986 PP
2Myb_DNA-binding48.91.5e-1598141146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+ +++++++++G++ W++ a  ++ gRt++++k++w++
      Gh_A11G2522  98 KGSFSPEEERIIIELHAKMGNR-WARMATQLP-GRTDNEIKNYWNT 141
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.3094092IPR017930Myb domain
SuperFamilySSF466891.99E-2844139IPR009057Homeodomain-like
SMARTSM007175.2E-104494IPR001005SANT/Myb domain
PfamPF002491.0E-124592IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-224699IPR009057Homeodomain-like
CDDcd001678.82E-94792No hitNo description
PROSITE profilePS5129425.72893147IPR017930Myb domain
SMARTSM007171.3E-1697145IPR001005SANT/Myb domain
PfamPF002491.2E-1498141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-25100146IPR009057Homeodomain-like
CDDcd001675.35E-12100141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MMMMMMGGGN NQFTAQNESG GSLGNNGMNN GGVGVGREGE IVLKKGPWTA AEDAVLAGYV  60
RRHGEGNWNA VRKNTGLARC GKSCRLRWAN HLRPNLKKGS FSPEEERIII ELHAKMGNRW  120
ARMATQLPGR TDNEIKNYWN TRVKRRQRQG LPLYPPDVQP HYSQHRQRHS HPPSPIPSPP  180
PTTEPNSCFS FQTPVVSPHT SNPMPLHPLH IPHRPPPQNF LYNPHSALTT PPPPLQSPNS  240
ASAPPPLPSP NALTPPHTSP LYSPHNPSPF PTLPLFDYPN ITTDDDFFHS NKRFKHDGLQ  300
SNNYNNIHLD ATSSSFTLPF SPMQHYSNGM TLDLPSSSRT AFNHHPHQDS GCFYPLKTDL  360
RSNQINDDGL LENILQEARA LAANGRGGNK EMPKEMMNSA QNEEEDYSRL INIDGLSSLG  420
MAIPEWCNDS GESSERQPSV ITDNENHLAL DMHQIASLYP ADISPNHAAR SSSVRSWDKF  480
PGLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30431465107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6162601e-68JX616260.1 Gossypium hirsutum clone NBRI_GE60774 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635022.10.0PREDICTED: transcriptional activator Myb-like
TrEMBLA0A2P5YTQ90.0A0A2P5YTQ9_GOSBA; Uncharacterized protein
STRINGGorai.007G312700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51002747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55020.17e-70myb domain protein 120