PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G2492
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 320aa    MW: 36165.3 Da    PI: 4.4993
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G2492genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.13.5e-092502822355
                  SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  +yp++ee+ +L++ +gL+++q+ +WF N+R ++
  Gh_A11G2492 250 PYPTEEEKLKLSQMTGLDQKQINNWFINQRKRH 282
                  8*****************************885 PP
2ELK377e-13202223122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ++K +L+rKYsgyL+sL++EF+
  Gh_A11G2492 202 DIKGMLMRKYSGYLSSLRKEFL 223
                  58*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.8E-2162106IPR005540KNOX1
PfamPF037906.1E-2164105IPR005540KNOX1
SMARTSM012562.9E-26109160IPR005541KNOX2
PfamPF037915.8E-25112159IPR005541KNOX2
SMARTSM011882.4E-6202223IPR005539ELK domain
PfamPF037891.1E-9202223IPR005539ELK domain
PROSITE profilePS5121310.58202222IPR005539ELK domain
PROSITE profilePS5007112.082222285IPR001356Homeobox domain
SuperFamilySSF466892.44E-19224292IPR009057Homeodomain-like
SMARTSM003897.9E-12224289IPR001356Homeobox domain
CDDcd000867.90E-15225286No hitNo description
Gene3DG3DSA:1.10.10.602.8E-26227287IPR009057Homeodomain-like
PfamPF059206.1E-17242281IPR008422Homeobox KN domain
PROSITE patternPS000270260283IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEDIYRLDDT VIACSNDVVR VNDFAAAVTT DFLSTPVDDH HLLQFDHQET DTGVTGSSAM  60
SDLIKTQIAT HPLYPNLVSA YIECQKVGAP PELASLLEEI GRESHTISGC GEIGADPELD  120
EFMESYCEVL HRYKEELSKP FDEATTFLTN IESQLSDLCK GALTMDYRTD EGAESSDEEL  180
SGGELVEACE SQEWHGGRRS QDIKGMLMRK YSGYLSSLRK EFLKKRKNGK LPKDARLTLL  240
DWWNNHYRWP YPTEEEKLKL SQMTGLDQKQ INNWFINQRK RHWKPSEDMK FALMEDVAGS  300
IRGGPPYFDT GAGTGTADDI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217226LRKEFLKKRK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Highly expressed in the early globular stage embryo before 2 days after pollination (DAP), but not in the endosperm. At 3 and 4 DAP, expression is restricted to the region around or just below the center of the ventral side of the embryo, where the shoot apex subsequently arises. During the transition to the shoot apex differentiation stage, expression is divided between the upper and basal regions of the shoot area, and the notch between the first leaf primordium and epiblast, respectively. When the first leaf primordia is evident, expression is localized to the notches between the shoot apical meristem (SAM) and the first leaf primordium and the putative second leaf primordium. Expressed uniformly in the inflorescence meristem, but after the transition from inflorescence to the floral phase, located specifically in the notches between the floral meristem and glume primordia. At later stages of flower development, uniformly expressed throughout the corpus of the meristem, and in the notches between glume primordia, but less well defined than in the previous stage. {ECO:0000269|PubMed:10488233}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2817732e-32GQ281773.1 Prunus persica class I KNOX homeobox transcription factor KNOPE6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628863.10.0PREDICTED: homeobox protein knotted-1-like 1
SwissprotQ9FP292e-97KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A2P5VVM50.0A0A2P5VVM5_GOSBA; Uncharacterized protein
STRINGGorai.007G306500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.11e-84KNOTTED-like from Arabidopsis thaliana 2
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]