PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G2393
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YC
Protein Properties Length: 259aa    MW: 28664.4 Da    PI: 6.2277
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G2393genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.72.4e-55761791101
        NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                  ql++fw++q   +ek++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdi
  Gh_A11G2393  76 QLQTFWANQyqeVEKVSDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 173
                  89******99899************************************************************************************* PP

        NF-YC  96 vprdel 101
                  vpr++l
  Gh_A11G2393 174 VPREDL 179
                  ***987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.36E-3367170IPR009072Histone-fold
PfamPF008081.6E-2198161IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.0E-3799176IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDHQGHGQPP AMGIIGGGAQ MPYGTNPYPN QVTGAPNSGS VGGIQPSSQP TGAQLAQHQL  60
AYQQIHQQQQ QQLQQQLQTF WANQYQEVEK VSDFKNHSLP LARIKKIMKA DEDVRMISAE  120
APVIFARACE MFILELTLRS WNHTEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREDLK  180
DEVLASIPRG TVPVGGPADA LPYYMPAQHA PQVGTPGMIM GKPVMDPALY AQQSHPYMAQ  240
PQQMWPPPGP EQQQSSSDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B6e-6284176395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148154RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.156930.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11867211, ECO:0000269|PubMed:17322342}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434105.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_012434106.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_012434107.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_012434108.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_016667403.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_016667408.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_016667413.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
SwissprotQ8L4B21e-88NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLA0A0D2R1E60.0A0A0D2R1E6_GOSRA; Uncharacterized protein
TrEMBLA0A1U8HTX50.0A0A1U8HTX5_GOSHI; nuclear transcription factor Y subunit C-9-like
STRINGGorai.007G295600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.42e-84nuclear factor Y, subunit C9
Publications ? help Back to Top
  1. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  2. Liu X, et al.
    The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12768
    [PMID:27624486]
  3. Myers ZA, et al.
    NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(9): p. e1006333
    [PMID:27685091]
  4. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  6. Gnesutta N, et al.
    CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer.
    Plant Cell, 2017. 29(6): p. 1516-1532
    [PMID:28526714]
  7. Bi C,Ma Y,Wang XF,Zhang DP
    Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis.
    Plant Mol. Biol., 2017. 95(4-5): p. 425-439
    [PMID:28924726]
  8. Liu X, et al.
    Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering.
    Plant Physiol., 2018. 177(1): p. 105-114
    [PMID:29599268]