PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A11G2316

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GeBP

Protein Properties

Length: 422aa MW: 46601.5 Da PI: 4.3526

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G2316	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	107.6	8.8e-34	128	231	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk........spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 lfqrlw++eDei lLqG++d+++ + + + ++d+ fy+++k++++++++k+qlveK+rrLKkK+++ +k+ sgke+sf+++hdq +fe+ Gh_A11G2316 128 LFQRLWTDEDEIELLQGFLDYTMLKTSsnpsstshHHHQDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVISKICSGKEFSFKSPHDQATFEI 225 79*****************876655455555445678******************************************************* PP DUF573 92 skkiWg 97 s++iW Gh_A11G2316 226 SRRIWS 231 ***6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	9.2E-32	129	231	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MASEQYGGVF EVSQDDDEEP SSSDNEVDEN DDVLNVNEDV LNDEDDEVLL EEDEDINSPS 60 LLPQPIPSQV SFASVPAVPL AVPSASAVTI AAISTDELPP DSKRQRVDSV VAEKKTPPPQ 120 QLDDSRRLFQ RLWTDEDEIE LLQGFLDYTM LKTSSNPSST SHHHHQDTAL FYDQIKSKLQ 180 LDFNKNQLVE KLRRLKKKYR NVISKICSGK EFSFKSPHDQ ATFEISRRIW SDGVSKVEDN 240 VLDDDENNNN NNASLIDESG EKKNLTQKPA ATKKRSRNKG VKMEEKRDVN DGIVHMDSNS 300 NDRVNNDNGN VEALGVGSSG GGANTGAAGV IEETVRSCVT PLFKELLGSV MVGGGGYGER 360 GISGLVMNAM PLCLGGGGGN GEWMDERWRK LQIMELEVYS KRVELVQDEI KAALEELRSM 420 NG

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MASEQYGGVF EVSQDDDEEP SSSDNEVDEN DDVLNVNEDV LNDEDDEVLL EEDEDINSPS  60
LLPQPIPSQV SFASVPAVPL AVPSASAVTI AAISTDELPP DSKRQRVDSV VAEKKTPPPQ  120
QLDDSRRLFQ RLWTDEDEIE LLQGFLDYTM LKTSSNPSST SHHHHQDTAL FYDQIKSKLQ  180
LDFNKNQLVE KLRRLKKKYR NVISKICSGK EFSFKSPHDQ ATFEISRRIW SDGVSKVEDN  240
VLDDDENNNN NNASLIDESG EKKNLTQKPA ATKKRSRNKG VKMEEKRDVN DGIVHMDSNS  300
NDRVNNDNGN VEALGVGSSG GGANTGAAGV IEETVRSCVT PLFKELLGSV MVGGGGYGER  360
GISGLVMNAM PLCLGGGGGN GEWMDERWRK LQIMELEVYS KRVELVQDEI KAALEELRSM  420
NG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017631565.1	0.0	PREDICTED: mediator-associated protein 1
TrEMBL	A0A2P5WWW3	0.0	A0A2P5WWW3_GOSBA; Uncharacterized protein
STRING	Gorai.007G285700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3098	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	7e-62	DNA-binding storekeeper protein-related transcriptional regulator