PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A11G2244

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 406aa MW: 44804.3 Da PI: 6.0039

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G2244	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.6	7.2e-15	208	263	3	58
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 ++kr rr+ +NRe+ArrsR+RK+a + eLe v +L eN +L k l +++ + + Gh_A11G2244 208 DVKRVRRMLSNRESARRSRRRKQAHLTELESQVSQLRVENADLLKSLTDISQRYNE 263 68******************************************999998887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-17	206	270	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.312	208	263	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-13	209	261	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-11	210	259	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.0E-11	210	262	No hit	No description
PROSITE pattern	PS00036	0	213	228	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	1.4E-34	277	400	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MHKTTKKPAN HPTNHTMDRV FSVEEIPDHF WSSSAPDDDK NKSPGSEMNR SASEWAFQQF 60 LREEVDKKGE DNEEEEAKEN GCFENNKHDN SPADVEDYQA FLKKKLNLAC AAVAMSMAYF 120 AKPQDSATRA DRGSQASNTP QLGSKTVSRR AGDKDDNAVA EVLSFPSGQK KFRAQVRPST 180 STGSSKEQSD EDEVEGENET TENMDPADVK RVRRMLSNRE SARRSRRRKQ AHLTELESQV 240 SQLRVENADL LKSLTDISQR YNEAAVNNRI LKADVETLKA KVKMAEEAVK RTTGLNPVFH 300 ALPEIPSMSS FDGCPSDTST DAAVYEEDGP KHTLYQAAAN DSISTHDLRI NNALADISSV 360 ENIQPVSEGS AVTGNKIGRT ASLHRVASLE HLQKRIGGGV SLNGKQ

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MHKTTKKPAN HPTNHTMDRV FSVEEIPDHF WSSSAPDDDK NKSPGSEMNR SASEWAFQQF  60
LREEVDKKGE DNEEEEAKEN GCFENNKHDN SPADVEDYQA FLKKKLNLAC AAVAMSMAYF  120
AKPQDSATRA DRGSQASNTP QLGSKTVSRR AGDKDDNAVA EVLSFPSGQK KFRAQVRPST  180
STGSSKEQSD EDEVEGENET TENMDPADVK RVRRMLSNRE SARRSRRRKQ AHLTELESQV  240
SQLRVENADL LKSLTDISQR YNEAAVNNRI LKADVETLKA KVKMAEEAVK RTTGLNPVFH  300
ALPEIPSMSS FDGCPSDTST DAAVYEEDGP KHTLYQAAAN DSISTHDLRI NNALADISSV  360
ENIQPVSEGS AVTGNKIGRT ASLHRVASLE HLQKRIGGGV SLNGKQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	222	229	RRSRRRKQ
2	224	229	SRRRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3805	0.0	boll\| ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017628206.1	0.0	PREDICTED: light-inducible protein CPRF2
Swissprot	Q99090	1e-116	CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBL	A0A0B0P269	0.0	A0A0B0P269_GOSAR; Light-inducible CPRF2
STRING	Gorai.007G277300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6846	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	1e-63	bZIP family protein

Publications ? help Back to Top
Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115]