PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G2219
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 135aa    MW: 15421.5 Da    PI: 7.4105
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G2219genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer83.72.1e-262687360
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmps...egee.gtaaalkCaACgCHRnFHRreveee 60
                  v+YkeC++NhA +lG ++vDGCgEf p+   +++e g++  + C ACgCHRnFHR+ev+++
  Gh_A11G2219 26 DVKYKECKRNHAPQLGINVVDGCGEFAPKgmsPSSEtGHVVDFDCEACGCHRNFHRKEVTKQ 87
                 589***********************9862223344478999****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.5E-222784IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-142794IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.9E-232884IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.0922983IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MASNFFEQKP FKPPFEIIAR RTKTLDVKYK ECKRNHAPQL GINVVDGCGE FAPKGMSPSS  60
ETGHVVDFDC EACGCHRNFH RKEVTKQVSI TFIDKEGANL YRFQPRSPQL KNEQEAVENE  120
ELDGIMKKPK NDESM
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Not detected in the meristem prior to exposure to long days (LDs), but after exposure to three LDs, stable accumulation on the flanks of the meristem adjacent to floral primordia, during floral induction. {ECO:0000269|PubMed:22319055}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022719697.12e-49mini zinc finger protein 1-like
SwissprotQ9M9S02e-16ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A2P5RM188e-89A0A2P5RM18_GOSBA; Uncharacterized protein
STRINGGorai.007G274100.19e-81(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2215545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-18homeobox protein 31