PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G2207
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 230aa    MW: 25569.4 Da    PI: 5.401
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G2207genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.8e-193383155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 ++y+GVr++  +g+WvAeIr+p   + r  r +lg+f t +eAa a++aa ++l+ 
  Gh_A11G2207 33 CRYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFNTSFEAALAYDAAYNNLHA 83
                 78*****999.**********8...3.35************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.28E-2633106No hitNo description
PfamPF008472.9E-133382IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-243482IPR001471AP2/ERF domain
SMARTSM003801.9E-2734112IPR001471AP2/ERF domain
PROSITE profilePS5103219.82334106IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-173484IPR016177DNA-binding domain
PRINTSPR003671.2E-93546IPR001471AP2/ERF domain
PRINTSPR003671.2E-95773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEAQGKTNGE RPSMGKSRKG CMRGKGGPEN AMCRYRGVRQ RTWGKWVAEI REPNRGSRLW  60
LGTFNTSFEA ALAYDAAYNN LHASDPIGTT AAARKLYGSS AKLNLPQPHD DHQTPCFTSL  120
LGNFVASCKE TGITMRQPLG NGLCVVESPP GSSVSSSQSS EERLVRREIN TNEFKGSSLG  180
DDGEEVFNWP EFSLENDFLE MSDIDVLMGQ EFRDNWNGNE IVGIQNQWFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-1435106360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492706.11e-135PREDICTED: dehydration-responsive element-binding protein 2D-like
RefseqXP_016755441.11e-135PREDICTED: dehydration-responsive element-binding protein 2D-like
TrEMBLA0A0D2SKM11e-134A0A0D2SKM1_GOSRA; Uncharacterized protein
TrEMBLA0A1U8PWD71e-134A0A1U8PWD7_GOSHI; dehydration-responsive element-binding protein 2D-like
TrEMBLA0A2P5Q8211e-134A0A2P5Q821_GOSBA; Uncharacterized protein
STRINGGorai.007G271900.11e-135(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2243945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-35ERF family protein