PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G2016 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 222aa MW: 25547.9 Da PI: 9.2662 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.5 | 2.3e-32 | 144 | 202 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ Gh_A11G2016 144 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 202 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-33 | 129 | 202 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.14E-28 | 136 | 203 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.344 | 139 | 204 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.8E-37 | 144 | 203 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.2E-25 | 145 | 201 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901141 | Biological Process | regulation of lignin biosynthetic process | ||||
GO:1904369 | Biological Process | positive regulation of sclerenchyma cell differentiation | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MQNQGLFEEQ QEMPTPMGFF STFPPNNITS CPPLGCHQSL KAFNIAAPHH HHALPTETLL 60 SSLSSPKHRE HLASDFGGPR LLSLQRSSAN LWAWGELNEC LGSKKNGVDD HLGVSAMKMK 120 RIKARRKVRE PRFCFKTMSE VDVLDDGYKW RKYGQKVVKN TQHPRSYYRC TQDNCRVKKR 180 VERLAEDPRM VITTYEGRHV HSPSHDLDDS QPSDSQLNNF FW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-27 | 135 | 201 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 5e-27 | 135 | 201 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.16854 | 0.0 | boll |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669843 | 0.0 | KF669843.1 Gossypium hirsutum WRKY transcription factor 116 (WRKY116) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017629718.1 | 1e-169 | PREDICTED: probable WRKY transcription factor 13 | ||||
Swissprot | Q9SVB7 | 1e-62 | WRK13_ARATH; Probable WRKY transcription factor 13 | ||||
TrEMBL | A0A1U8IWP1 | 1e-166 | A0A1U8IWP1_GOSHI; probable WRKY transcription factor 13 isoform X1 | ||||
STRING | Gorai.007G246500.1 | 1e-159 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6106 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 1e-45 | WRKY DNA-binding protein 13 |