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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_A11G1965 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
GRAS |
| Protein Properties |
Length: 405aa MW: 45106.6 Da PI: 5.0264 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A11G1965 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 315.6 | 1.1e-96 | 2 | 402 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.....fsevsPilkfs 94
++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl+ f++AL r a+ s+++k l++ ++++ n s ++ +++ f++++P+++f+
Gh_A11G1965 2 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTCAFLRALIVRAAK--SGTCKMLAAMANAHCNLSIDIHTFSVielasFVDLTPWHRFG 97
79****************************************************..8899999888888888666666665556688*********** PP
GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl...vakr 185
+ +aN aIleaveg + +Hi+D+++++++Q p+L++a+asR egpp +++T+ g ++++ ++ee+g++L +fA++ +v +ef+++ +a+
Gh_A11G1965 98 FTAANAAILEAVEGYSVIHIVDLSLTHCMQIPTLIDAIASRLEGPPLVKLTVAGGATEDvppmLDLSYEELGSKLINFARSRNVVLEFRAIpstYADG 195
******************************************************99988998888899***********************9984445 PP
GRAS 186 ledleleeLrvkp......gEalaVnlvlqlhrll................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
+++l +e+Lrv++ gEal++n++++lh+l+ e+ s++s r+ +Lk++++l P+vvv+v+++ad++s++++ r+ a+
Gh_A11G1965 196 FSSL-IEQLRVQHlvyaesGEALVINCHMMLHYLPeetlsplsnvnsnpysFEPSSTQSLRTMFLKALRGLDPTVVVLVDEDADLTSNNLVCRLRAAF 292
5555.55555555555559*******************************988899999999************************************ PP
GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
+y + +d++++ lp+ s++r+++E+ ++++i+nv+a+eg +r+er e +++W +r++++GF+ v+++e+a +++k++l +++ g+ +++e++ lv
Gh_A11G1965 293 NYLWIPYDTVDTFLPQGSKQRQWYEAD-ISWKIENVIAHEGLQRVERLEPKSRWVQRMRNVGFRGVSFGEEAISEVKTMLDEHA-AGWGLKKEEDDLV 388
***************************.********************************************************.8999********* PP
GRAS 360 lgWkdrpLvsvSaW 373
l+Wk++++v+++aW
Gh_A11G1965 389 LTWKGHNVVFATAW 402
************** PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 405 aa
Download sequence Send
to blast |
MEQLLVHCAN AIESNDATLA QQILWVLNNI APPDGDSNQR LTCAFLRALI VRAAKSGTCK 60
MLAAMANAHC NLSIDIHTFS VIELASFVDL TPWHRFGFTA ANAAILEAVE GYSVIHIVDL 120
SLTHCMQIPT LIDAIASRLE GPPLVKLTVA GGATEDVPPM LDLSYEELGS KLINFARSRN 180
VVLEFRAIPS TYADGFSSLI EQLRVQHLVY AESGEALVIN CHMMLHYLPE ETLSPLSNVN 240
SNPYSFEPSS TQSLRTMFLK ALRGLDPTVV VLVDEDADLT SNNLVCRLRA AFNYLWIPYD 300
TVDTFLPQGS KQRQWYEADI SWKIENVIAH EGLQRVERLE PKSRWVQRMR NVGFRGVSFG 360
EEAISEVKTM LDEHAAGWGL KKEEDDLVLT WKGHNVVFAT AWLPA
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | GQ393538 | 1e-100 | GQ393538.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0503 SSR marker CGR5533 genomic sequence. |
