PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1942
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 290aa    MW: 31315.3 Da    PI: 10.6548
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1942genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.4e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G+g W+ I +          R+  ++k++w++
      Gh_A11G1942  5 KQKWTAEEEAALKAGVLKHGTGKWRNILSDPEfssvlRSRSNVDLKDKWRN 55
                     79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.54161IPR017930Myb domain
SuperFamilySSF466898.22E-16270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-14456IPR009057Homeodomain-like
SMARTSM007177.0E-8459IPR001005SANT/Myb domain
PfamPF002495.2E-8555IPR001005SANT/Myb domain
CDDcd116605.16E-18657No hitNo description
SMARTSM005269.9E-15116181IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.495118186IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467855.9E-16120195IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.9E-15122188IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005387.1E-10124179IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV LKHGTGKWRN ILSDPEFSSV LRSRSNVDLK DKWRNINATA  60
IWGSRQKAKL ALKRNQLAAK HDDNPMALIT VPPREEVVDA KPLAVSSGTT RATGSKKLIS  120
RLDNILLEAI TSLKEPAGSD RASIAVYIEE KYATPPNLKK LLATKLKLLV ANGTLIKVKH  180
KYKVAPRSTI SEARKSPLLL SEGRPKDSSK AKKKGINILS KTQVNADLLK MRSMTAEEAA  240
AAAAQAVAEA EVAIAEAEKA AREADVAEAE AEAAKIFAKA AEKALKSRML
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.198170.0boll| embryo| leaf| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}.
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016680428.10.0PREDICTED: telomere repeat-binding factor 2-like
SwissprotQ9FJW52e-84TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A1U8IVL30.0A0A1U8IVL3_GOSHI; telomere repeat-binding factor 2-like
STRINGGorai.007G224200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38092759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.25e-76MYB_related family protein
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]