PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1920
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 676aa    MW: 75115 Da    PI: 7.0645
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1920genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2392e-12325381155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Gh_A11G1920 325 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEEKAARAYDLAALKYWG 381
                  78*******************87776664446655.77******************98 PP
2AP241.72.8e-13426476355
          AP2   3 ykGV.rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GV +++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Gh_A11G1920 426 YRGVtSRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 476
                  9****99**********988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-9325381IPR001471AP2/ERF domain
CDDcd000181.22E-18325389No hitNo description
SuperFamilySSF541712.22E-14325391IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-12326390IPR001471AP2/ERF domain
SMARTSM003801.1E-22326395IPR001471AP2/ERF domain
PROSITE profilePS5103217.451326389IPR001471AP2/ERF domain
PRINTSPR003672.6E-6327338IPR001471AP2/ERF domain
CDDcd000183.41E-23424486No hitNo description
SuperFamilySSF541711.83E-16424485IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-18425484IPR001471AP2/ERF domain
SMARTSM003802.0E-30425490IPR001471AP2/ERF domain
PROSITE profilePS5103219.111425484IPR001471AP2/ERF domain
PfamPF008479.4E-8426476IPR001471AP2/ERF domain
PRINTSPR003672.6E-6466486IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MKSMSNDDNN NNNNNCSNWL GFSLSSHMKM EVSNQGHNSN HKTLLAASGV TTAVPSSFFP  60
SPPSHLSYGL YYEGENGGLY SHFPVMPLKS DGSLCLMEAL GRSQSQAMVP TSTPKLEDFF  120
GGATMGTHHY ESSDRETMAL SLDSMYYHQN PNQDHNSQNC LDHLQHSSRQ QHHQHQLQVQ  180
QYQYYSGYRN QEMLLAEEAD QETHVTDCNL QLPTMADDGS AAMKHWASRN YSTEHSAMNQ  240
KMIGCMGDNG ADSGSIGAMA YGDLQSLSLS MSPGSQSSSV AGSQQISPSA TDYAAMETKK  300
RGPEKVDQKQ IAHRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQSRKGRQG  360
GYDMEEKAAR AYDLAALKYW GPSTHINFPL ENYQKELEEM KNMTRQEYVA HLRRKSSGFS  420
RGASMYRGVT SRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGANAV  480
TNFDITRYDV ERIMASSTLL AGDLARRNKD IGPANETINH NLLVHNSYGE TNISPKNNGS  540
QPDWKIVLHQ SPEQQMEMKQ ANMIENYKRQ DFSLAPDNLV GTDTINSGQR EVDDSNKMGT  600
HFSNASSLLT SLSSSTQGSS GSLDRNSLPL PFAMPAPPTK LFTSSTNSLN SWIPSAQLRP  660
ALAVPTVPVF TAWTDA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.249560.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}.
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6144285e-96JX614428.1 Gossypium hirsutum clone NBRI_GE57792 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016680246.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-141CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2P5RGU00.0A0A2P5RGU0_GOSBA; Uncharacterized protein
STRINGGorai.007G226500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31372863
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-126AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]