PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G1833 | ||||||||
Common Name | CBF20, DREB1C | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 351aa MW: 39240.6 Da PI: 6.1766 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.6 | 4.3e-20 | 150 | 200 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae Aa a+++a+ kl+ge Gh_A11G1833 150 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEAAALAYDKAAYKLRGE 200 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.41E-23 | 149 | 209 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.4E-32 | 150 | 208 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.261 | 150 | 207 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.49E-23 | 150 | 208 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-37 | 150 | 213 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 151 | 162 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-13 | 151 | 200 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 173 | 189 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MAAAIDMYNS NSNSSVFSDP FSAELMKALE PFMKSASSTS PLSSSSSYSQ SNLYPEFCSP 60 WRTHLCSEQG FCNYQNLMGF EQTGSIGLNQ LTPSQILQIQ AQIYQQQQQQ QEVASKSTTA 120 SLKNQRFNFL SPKAVPMKHV SSTPPKPTKL YRGVRQRHWG KWVAEIRLPK NRTRLWLGTF 180 DTAEAAALAY DKAAYKLRGE FARLNFPHLK HQGAHISGEF GDYKPLHSAV DAKLQAICQS 240 LQKQENSGKA CSVPDSNPKV EFDYPVKREE FDQSPRFASP KVEMNSLSSS SSSPSSPDLS 300 DESLAGSSSP ESDITFFDFS DSKWDDNEIF GLEKYPSVEI DWEAIRELSE S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-21 | 149 | 207 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.15123 | 0.0 | boll| ovule |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ848094 | 0.0 | GQ848094.1 Gossypium hirsutum DREB1C (DREB1C) mRNA, complete cds. | |||
GenBank | KP780203 | 0.0 | KP780203.1 Gossypium hirsutum C-repeat binding factor 20 (CBF20) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001313783.1 | 0.0 | ethylene-responsive transcription factor ERF060-like | ||||
TrEMBL | A0A1U8ILU9 | 0.0 | A0A1U8ILU9_GOSHI; ethylene-responsive transcription factor ERF060-like | ||||
STRING | Gorai.007G240700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2680 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 2e-71 | ERF family protein |