PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1730
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 817aa    MW: 88867.6 Da    PI: 6.9812
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1730genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.32.9e-095996361954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Gh_A11G1730 599 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 636
                  664459******************************88 PP
2BELL92.15.3e-304775301972
         BELL  19 VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  V++rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+
  Gh_A11G1730 477 VERRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAISAQL 530
                  99*************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.8E-74374528IPR006563POX domain
PfamPF075265.2E-49379527IPR006563POX domain
PROSITE profilePS5007112.568577640IPR001356Homeobox domain
CDDcd000868.10E-13580641No hitNo description
SMARTSM003891.2E-9580644IPR001356Homeobox domain
SuperFamilySSF466894.23E-17582647IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-28583646IPR009057Homeodomain-like
PfamPF059204.2E-18597636IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MGIATPPLVA SILSQESQPS KKIHHQIPIQ HKSNNSTNSM SQDYHQAAGI FSFSNGFERS  60
AVSHQEHQKQ QQQHLEQQIR RDKLRVEGFE PPPPPLVGIE EEESTSLPVY ETAGMLSEMF  120
NFPSGAAAAA AAATASAELL DQHVQPNYRA HRPVQGNTNE WYSNRQGVVG GLGQLGESKS  180
HITRDSLAQQ HQQQQQLPSI NADSAAAMHL FLMNPQQRSP SPPPPPPATS SNTLHMLLPN  240
PSTSLQGFNV SGPGGGFGTS TVLSPPQFTW VPGSAHEGGN NTDSQLSSQN EIGSVVEGQG  300
LSLSLSSSLQ HLEAAKAEEL RMGDGGLLYY NQGGGSAAQF HQYRNLGSHH QTMHLQGGVG  360
QNQQVHHVGF GSSLGMVNVL RNSKYVKAAQ ELLEEFCSVG RGQFKKNKFG RNNTNPSSDP  420
VSSGCAGGGG SSSSTKDLPP LSAADRIEHQ RRKVKLLSML DEACNLFLYS PIFSFIVERR  480
YNHYCEQMQM VVNSFDLVMG FGAAVPYTAL AQKAMSRHFR CLKDAISAQL KHSCEMLGEK  540
DGAGSSGITK GETPRLRMLE QSLRQQRAFN QMGMMEQEAW RPQRGLPERS VNILRAWLFE  600
HFLHPYPSDA DKHLLARQTG LSRNQVSNWF INARVRLWKP MVEEMYQQET KEEGDHNNNN  660
NNNHTERERN PNNNNNAQTS TPSTTAAPTT TTTTSVGKGS QINATENDPS LIAINTPQCF  720
SENQANPTAT EVAPPISQPF TTTIPHDSDI HHQRIAGTTV AAADYGTTAG GNTDIGSSLI  780
RLGTTTAGDV SLTLGLRQAG NMPENTSSFS VRDFGGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16586644563Homeobox protein Meis2
3k2a_B2e-16586644563Homeobox protein Meis2
4xrm_A2e-16586644563Homeobox protein Meis2
4xrm_B2e-16586644563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016697058.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_016697059.10.0PREDICTED: BEL1-like homeodomain protein 4
TrEMBLA0A1U8K8U10.0A0A1U8K8U1_GOSHI; BEL1-like homeodomain protein 4
STRINGGorai.007G207200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-161BEL1-like homeodomain 2