PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G1721 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 215aa MW: 25034.3 Da PI: 6.2635 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60 | 3.8e-19 | 62 | 116 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eq++ Le F +++++ e++ ++A++lgL+ rqV vWFqNrRa++k+ Gh_A11G1721 62 KKRKLNQEQVTLLELNFGNEHKLESERKDRIASELGLDPRQVAVWFQNRRARWKN 116 45689************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 117.6 | 6.9e-38 | 62 | 153 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+l++eqv+lLE +F +e+kLe+erK ++a+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ +++++ +++rLe+ev +L+e+l+e Gh_A11G1721 62 KKRKLNQEQVTLLELNFGNEHKLESERKDRIASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKSLHETVVLDKCRLESEVVKLKEQLSE 153 9****************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.5E-15 | 60 | 121 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.99E-17 | 62 | 126 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.3E-16 | 62 | 116 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 15.92 | 62 | 117 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.85E-15 | 62 | 118 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-19 | 64 | 124 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.3E-5 | 88 | 97 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 92 | 115 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.3E-5 | 97 | 113 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MSQDYEMMTS QMNEHEDHIA LISQIYPGFY TQIATHQAGE PKPRRRRKKN KGGENSQCAV 60 AKKRKLNQEQ VTLLELNFGN EHKLESERKD RIASELGLDP RQVAVWFQNR RARWKNKKLE 120 EEYSTLKSLH ETVVLDKCRL ESEVVKLKEQ LSEAEKEILQ LTERVDGVSS KSTSSSVLSM 180 EAIDPVFHGE FGYEDVFYIG ENNYVLGMEW MNLFM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 46 | 64 | RKKNKGGENSQCAVAKKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.3578 | 1e-180 | boll| ovule |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 78347198 | 1e-180 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012491697.1 | 1e-142 | PREDICTED: homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | O23208 | 1e-71 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A0D2TIR8 | 1e-140 | A0A0D2TIR8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G206000.1 | 1e-141 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2208 | 26 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 1e-65 | homeobox protein 40 |
Publications ? help Back to Top | |||
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