PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1692
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 325aa    MW: 36071.3 Da    PI: 9.1874
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1692genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.86.4e-34115169459
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  +rYkeClkNhAas+Ggh+vDGCgEfmps geegt++alkCaAC+CHR+FHR+e + 
  Gh_A11G1692 115 IRYKECLKNHAASMGGHVVDGCGEFMPS-GEEGTPEALKCAACECHRSFHRKEING 169
                  79*************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-21113168IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.5E-31115167IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.7E-31116167IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.418117166IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.68E-19245319IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-29246319IPR009057Homeodomain-like
PROSITE profilePS500718.633256320IPR001356Homeobox domain
TIGRFAMsTIGR015651.3E-27258315IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MELRGQDNKE MGMPSSFSYK NQLNKDSYSS APVNSATGER RRDRTVRGDP NLPQTLDDPL  60
SVPNPRRDPD PDPVSASTAT TGEIAAAADS RSPPTPEPQP VAGPTSATIS FTPLIRYKEC  120
LKNHAASMGG HVVDGCGEFM PSGEEGTPEA LKCAACECHR SFHRKEINGE SQYAPSSYYY  180
TNNNNNTRRN AVRPPRRATP LHHQRFSLGL SASPPAMSVA PLMMSFGGGG PAESSSEDLH  240
VFHFSEGGQQ PSHPHSSKKR FRTKFSQEQK KKMMEFADKL GWKIQKQDDE QVQQFCDQVG  300
VKRQVLKVWM HNNKQVMKRT NVRDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-232573141673ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257271KKRFRTKFSQEQKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.262190.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6149440.0JX614944.1 Gossypium hirsutum clone NBRI_GE58680 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016682801.10.0PREDICTED: zinc-finger homeodomain protein 6-like
SwissprotQ9ZPW76e-69ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A1U8IXK50.0A0A1U8IXK5_GOSHI; zinc-finger homeodomain protein 6-like
STRINGGorai.007G202500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65152543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.13e-69homeobox protein 24