PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G1690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 83aa MW: 9365.35 Da PI: 7.6777 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.9 | 2.3e-08 | 15 | 58 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ + + +a +++ + +W Ia+ +g g++++++k ++ Gh_A11G1690 15 SWTPKQNKMFEKALAEFDQDtpeRWINIAKAVG-GKSAEEVKQHY 58 7******************9*************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.737 | 8 | 62 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.0E-6 | 12 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-5 | 13 | 62 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.69E-13 | 14 | 70 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.5E-7 | 15 | 58 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.04E-6 | 16 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence Send to blast |
MASHSLSSSR SSNSSWTPKQ NKMFEKALAE FDQDTPERWI NIAKAVGGKS AEEVKQHYEI 60 LVRDVKEIES GRYPYPYPSG SSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-27 | 6 | 76 | 1 | 71 | RADIALIS |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 109867139 | 1e-141 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017630031.1 | 7e-56 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 1e-31 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | A0A2P5YQG4 | 2e-54 | A0A2P5YQG4_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G202300.1 | 1e-43 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 9e-29 | RAD-like 1 |