PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G1650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GATA | ||||||||
Protein Properties | Length: 351aa MW: 38513 Da PI: 5.6786 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.4 | 2.3e-19 | 267 | 301 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+tkTp+WR gp g ktLCnaCG+++++ +l Gh_A11G1650 267 CSHCGVTKTPQWRAGPMGAKTLCNACGVRFKSGRL 301 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 2.9E-87 | 1 | 344 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 12.229 | 261 | 297 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.8E-18 | 261 | 315 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.33E-14 | 263 | 324 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.9E-15 | 265 | 299 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.78E-14 | 266 | 314 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 267 | 292 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.3E-17 | 267 | 301 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MECVEAALKT SFRKEMALKP SPQAFLEDIW VVNGQNGVSC DDFSVDDLFD FSNEEGFLQQ 60 KRADEEDEEE EEVPASSSLP KRQKLSQDNG HFSNDSTTNF DYGSLSTNEL AVPVPFLQAD 120 DVENLEWLSH FVEDSFSEHS TAYPTGTLME KPKLLDGNLP EPEKSVTMTA CFESPVPAKA 180 RSKRVRTGGR VWSLVATPSL TESSSSSTSS SSSSSPCPWM LCPNSGSGSI FELSEPLSVE 240 KPPVKKHKKR PSTDTTGCNG TQPTRRCSHC GVTKTPQWRA GPMGAKTLCN ACGVRFKSGR 300 LLPEYRPACS PTFSSELHSN HHRKVLEMRR KKETLGQAEP GLTPPVVPSF G |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 243 | 250 | VKKHKKRP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.10167 | 0.0 | boll| ovule |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF313518 | 1e-104 | KF313518.1 Firmiana danxiaensis microsatellite a4964_SSR62 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017627216.1 | 0.0 | PREDICTED: GATA transcription factor 5-like | ||||
Swissprot | Q9FH57 | 5e-96 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | A0A2P5WGQ1 | 0.0 | A0A2P5WGQ1_GOSBA; GATA transcription factor | ||||
STRING | Gorai.007G197900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3698 | 25 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 5e-90 | GATA transcription factor 5 |