PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A11G1601

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 226aa MW: 26067.6 Da PI: 9.4098

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G1601	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.6	5.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEde+l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl Gh_A11G1601 14 KGSWTREEDERLIAYIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 799***************************99**********97 PP
2	Myb_DNA-binding	57.2	3.9e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEdel+++ + +lG++ W+ Ia +++ gRt++++k++w+++ Gh_A11G1601 67 RGNFTDEEDELIIKFHSLLGNK-WSIIAGRLP-GRTDNEIKNHWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.554	9	61	IPR017930	Myb domain
SMART	SM00717	8.1E-13	13	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.95E-29	13	108	IPR009057	Homeodomain-like
Pfam	PF00249	5.5E-15	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-23	15	68	IPR009057	Homeodomain-like
CDD	cd00167	8.13E-10	16	61	No hit	No description
PROSITE profile	PS51294	28.775	62	116	IPR017930	Myb domain
SMART	SM00717	9.5E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	6.3E-16	67	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-27	69	116	IPR009057	Homeodomain-like
CDD	cd00167	2.75E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MGRSPCCEKG HTYKGSWTRE EDERLIAYIQ AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDVKRGNF TDEEDELIIK FHSLLGNKWS IIAGRLPGRT DNEIKNHWNT HIKRKLLSRG 120 IDPLTHRPVN EQAAIHTIDT VSSTAVLRED ERQTNQELNL ELQISPPSLH SHPPQVLRKR 180 NRKVICFYCS LGLRNSKECT CEGSSHSRSI QHVSFCTWRK AFQSEN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-29	14	116	27	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.20690	0.0	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ459167	7e-71	AJ459167.1 Gossypium hirsutum partial myb137 gene, clone pGhMYB137.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016676657.1	1e-168	PREDICTED: myb-related protein 308-like
Refseq	XP_017628318.1	1e-168	PREDICTED: myb-related protein 308-like
Swissprot	P81393	2e-95	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A0B0N7Y9	1e-167	A0A0B0N7Y9_GOSAR; Myb-related protein
TrEMBL	A0A1U8IEZ7	1e-167	A0A1U8IEZ7_GOSHI; myb-related protein 308-like
STRING	Gorai.007G192900.1	1e-161	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	2e-90	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]