PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G1492 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 29292.4 Da PI: 7.9514 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 7.1e-17 | 45 | 92 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++ +G g+W++ ++ g++R++k+c++rw +yl Gh_A11G1492 45 KGAWSKQEDQKLIDYIRIHGEGCWRSLPKAAGLHRCGKSCRLRWINYL 92 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3.2e-16 | 98 | 142 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ Gh_A11G1492 98 RGNFAQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 142 89999*****************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-24 | 36 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.807 | 40 | 92 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.61E-28 | 42 | 139 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-14 | 44 | 94 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-15 | 45 | 92 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.76E-11 | 47 | 92 | No hit | No description |
PROSITE profile | PS51294 | 26.331 | 93 | 147 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-25 | 96 | 147 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-15 | 97 | 145 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 98 | 142 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.28E-11 | 100 | 143 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MCFPLPPSSY FLSPCLVAQK VRESFTFDFE TPMRKPCCDK QGTNKGAWSK QEDQKLIDYI 60 RIHGEGCWRS LPKAAGLHRC GKSCRLRWIN YLRPDIKRGN FAQDEEDLII KLHALLGNRW 120 SLIAGRLPGR TDNEVKNYWN SHIKRKLMKM GIDPNNHKLN QYPHHVGPLN PTTTNSMDVA 180 CKLRVCSTDN DDGISDAASY LEDATPPTGI SNLDLDLTIA FPSSPIKNII EESQQKTASI 240 VTNDEEEQYT VPTLLLFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 45 | 147 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.16624 | 0.0 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, flower buds, and siliques. {ECO:0000269|PubMed:9839469}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF034134 | 0.0 | AF034134.1 Gossypium hirsutum MYB-like DNA-binding domain protein (MYB6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012491251.1 | 0.0 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | Q38851 | 1e-75 | MYB6_ARATH; Transcription repressor MYB6 | ||||
TrEMBL | A0A0D2QUZ7 | 0.0 | A0A0D2QUZ7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G179300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 5e-78 | myb domain protein 6 |