PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1391
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 487aa    MW: 53495.4 Da    PI: 6.973
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1391genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-3093150260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  +DgynWrKYGqK vkg+ef rsYY+Ct+++C++kk++ers+ d+k+v+++Y g+H+h+k
  Gh_A11G1391  93 QDGYNWRKYGQKLVKGNEFVRSYYKCTHPNCRAKKQLERSH-DGKMVDTVYVGQHDHPK 150
                  7****************************************.***************85 PP
2WRKY106.41.5e-33265323159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dgy+WrKYGqK vkg+++prsYYrC+s+gCpvkk+ver+++d k+v++tYeg+H+h+
  Gh_A11G1391 265 VNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDAKLVITTYEGQHDHD 323
                  58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.5687151IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-2690151IPR003657WRKY domain
SuperFamilySSF1182908.76E-2492151IPR003657WRKY domain
SMARTSM007744.7E-3392150IPR003657WRKY domain
PfamPF031061.1E-2393149IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-35251325IPR003657WRKY domain
SuperFamilySSF1182903.66E-29258325IPR003657WRKY domain
PROSITE profilePS5081136.036260325IPR003657WRKY domain
SMARTSM007744.2E-39265324IPR003657WRKY domain
PfamPF031063.2E-26266322IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MVPSGECVTE EVGKDKLRSP DTGSHALQHN TDGKIPSSQS DQGGETPLIK SEKDPLSQSE  60
KLGNASSVIT KQTPSLLPGM EGSSPVACER ASQDGYNWRK YGQKLVKGNE FVRSYYKCTH  120
PNCRAKKQLE RSHDGKMVDT VYVGQHDHPK PLNLPLAVGF AVSVVEERPD KSLQTVVRDK  180
SLDAQMPHQI EPRSGSQPLS SAVSEDVKGT ASKSNKIQNV ADSDDDHLVS KRRKKENSNA  240
DASPVEKPTN DSRMVIKTFS EVDIVNDGYR WRKYGQKLVK GNPNPRSYYR CSSPGCPVKK  300
HVERASHDAK LVITTYEGQH DHDLPPTRSV THNTTGVNVH SAAHSGESRT KVEESETICL  360
DMVVYSGSVA ENKSSEQLNG ELRTKSDFSG TVCVSLIDAP ISGPASRLNE QQIEKLDPSE  420
ESDAVDCGTI VHSKSNSQNT SREQLSSKLE MKSEKDTVCI DKMVHITPRS ECTFNEQRMP  480
SAEPVQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-3894326175WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.218500.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed to similar levels in root and flower, to a somewhat lower level in stem and to low levels in leaf and siliques. {ECO:0000269|PubMed:8972846}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384740.0KM438474.1 Gossypium aridum WRKY95 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016709716.10.0PREDICTED: WRKY transcription factor 1-like
SwissprotQ9SI373e-95WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A1U8L5280.0A0A1U8L528_GOSHI; WRKY transcription factor 1-like
STRINGGorai.007G167100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79492639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.23e-99zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]