PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A11G1359

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 412aa MW: 45979.4 Da PI: 6.5096

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G1359	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.2	5.8e-31	89	143	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+ Fv+av++LGG++kAtPktil+lm+++gL l+hvkSHLQk+Rl Gh_A11G1359 89 KPRLRWTYELHAYFVDAVNKLGGPQKATPKTILDLMDLDGLNLYHVKSHLQKFRL 143 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.121	86	146	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-27	87	143	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.9E-22	89	144	IPR006447	Myb domain, plants
SuperFamily	SSF46689	7.7E-15	89	143	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MENNVVNQNP GEFKRTEKGK EAVDGHEGDV NGDNQGDHHQ IQGGGHNTLL ALQETQGRSI 60 PVEINDDQVV NNEVVVKEKP ILMVTNEIKP RLRWTYELHA YFVDAVNKLG GPQKATPKTI 120 LDLMDLDGLN LYHVKSHLQK FRLGKFWVKD WQDTSKNVSQ HQGGARSLRP LNSPSQNKEP 180 NRFNLLICLA GLRFLFSIVA YWHTLCRRAK AKRNRGPKKE PRGRLYMQLQ ATMTLQAQKH 240 YLWYMESQRM NLNPGLANQH LGGAATGNAF PYGQGQSSSG LGTFATMPGP SDFGTVAASP 300 QFYVNQQNAC PPTYDVPTGQ ANPCLQEVPP SGHQPQTSLY PAPESLSTPN SYPASSHQET 360 SPVLPGSETE DEDLIEALLN WDDNEPINLD ASFNFDNLHG CINYNDLQDW LK

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MENNVVNQNP GEFKRTEKGK EAVDGHEGDV NGDNQGDHHQ IQGGGHNTLL ALQETQGRSI  60
PVEINDDQVV NNEVVVKEKP ILMVTNEIKP RLRWTYELHA YFVDAVNKLG GPQKATPKTI  120
LDLMDLDGLN LYHVKSHLQK FRLGKFWVKD WQDTSKNVSQ HQGGARSLRP LNSPSQNKEP  180
NRFNLLICLA GLRFLFSIVA YWHTLCRRAK AKRNRGPKKE PRGRLYMQLQ ATMTLQAQKH  240
YLWYMESQRM NLNPGLANQH LGGAATGNAF PYGQGQSSSG LGTFATMPGP SDFGTVAASP  300
QFYVNQQNAC PPTYDVPTGQ ANPCLQEVPP SGHQPQTSLY PAPESLSTPN SYPASSHQET  360
SPVLPGSETE DEDLIEALLN WDDNEPINLD ASFNFDNLHG CINYNDLQDW LK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-19	89	146	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-19	89	146	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-19	89	146	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-19	89	146	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-19	89	146	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-19	89	146	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-19	89	146	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-19	89	146	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-19	89	146	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-19	89	146	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-19	89	146	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-19	89	146	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017630196.1	0.0	PREDICTED: myb family transcription factor PHL8-like
TrEMBL	A0A0D2QTW8	0.0	A0A0D2QTW8_GOSRA; Uncharacterized protein
STRING	Gorai.007G163400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22091	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	6e-28	G2-like family protein