PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A11G1351

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 1137aa MW: 128516 Da PI: 7.3961

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G1351	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.4	4.2e-12	5	53	8	56
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ql eLe ++ n+yp+++e+e A++lgLt +qV+ WF +R ++k Gh_A11G1351 5 SQFQLIELEYIYKDNKYPTQKEIEGYAASLGLTLKQVQQWFASKRKRDK 53 789******************************************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	13.216	1	55	IPR001356	Homeobox domain
SMART	SM00389	3.8E-7	1	59	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.72E-11	3	59	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-10	3	53	IPR009057	Homeodomain-like
CDD	cd00086	6.83E-12	3	53	No hit	No description
Pfam	PF00046	2.4E-9	5	53	IPR001356	Homeobox domain
SMART	SM00571	2.0E-8	360	419	IPR018501	DDT domain
PROSITE profile	PS50827	12.185	360	419	IPR018501	DDT domain
Pfam	PF02791	1.0E-9	361	416	IPR018501	DDT domain
Pfam	PF15612	1.6E-9	636	676	IPR028942	WHIM1 domain
Pfam	PF15613	2.2E-12	769	842	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1137 aa Download sequence Send to blast
MKRKSQFQLI ELEYIYKDNK YPTQKEIEGY AASLGLTLKQ VQQWFASKRK RDKGTILPIH 60 SMTSLSASTK RNAAAISVAR KNQKSTSSVG ANGFGKKKKK MLLPQDFLSP QYILSKVFRK 120 DGPPLGVEFD SIPSQAFHCK GSTESYPADE ECQRAAAKKR KVFELASIDH QNNSTESASV 180 KKHGMGKGLM TVWRVVNPEG GDIPTGIDIS NRQIVAPSQT SPVVRRQPPR NKRRQPLVSQ 240 MKQRSLEKKL QEKKRASIKR REVQSNKNDN QRQPRNEKCE LALDGTISNE RLDQLAMLVD 300 DEELELRELQ AGPNPLQCAD HLGTSGLLGC SLCKDLLAKF PPDSVKMKQP FSMQPWDSSP 360 ETVKKLFKVF HFLYTYSVTL DTCSFTLDEF AQAFHDKDSL LLGKIHVALL KLLLSDVEVE 420 LSGAVLPHFS LSCKFLALLH SVENQEFVVE FWKTSLNPLT WTEILRQVLV AAGFGSKQGL 480 LRREALNKEM SLMVRFGLRP GSLKSELFKI LSERGNNGLK VSDLALSLPV TELNLTSTTE 540 ELEELICSTL SSDITLFEKI SPSAYRLRCS SVAKDGNNCH SDTEDSGSVD DDSDDSSDDS 600 DHDSGNYYQR KFKHNNHHKG RNNMLTVHTE IDESHPGEVW LLGLMEGEYS DLSIEEKLNA 660 LVALIDLLSD GSSIRMENPG KAIVEYVPSI PHYGSGAKIK RSSSNRQNFP RPSWVYGGQR 720 NGVQVSHTSS DSRPVDSSAI TKSFEKERCS SSGQDAKQTE VGVYIHPMQS IFLGSDRRYN 780 RYWLFLGPCN AYDPGHRRIY FESSEDGHWE VIDTEEALRA LLAVLDDRGK REALLIESLE 840 KRETSLCQEM SSRHLHDAEI RNTPSYSPEM DAVREDSCSP VSDVDNLSLT VAMNESLTSC 900 CAIVLHAGKK GEEQNRMWRR LQEFDVWIWD YFYLNLNAVK HNKRSYLDSL TRCESCHDLY 960 WRDEKHCRIC HTTFEIDFDL EERYAIHVAT CREKGDNSTF PKFKVLPSQL QSLKAAVHAI 1020 ESFMPKDALV GAWTKSAHRL WVKRLRRTSS LSELLQVIAD FVAAINENWL NQCHIEQGGC 1080 TVIEEIIAFF PTMPQTSSAL ALWLVKLDEF IASYLKKIHS GTELENGTRS DRRAAKE

Sequence ? help Back to Top

Protein Sequence Length: 1137 aa Download sequence Send to blast

MKRKSQFQLI ELEYIYKDNK YPTQKEIEGY AASLGLTLKQ VQQWFASKRK RDKGTILPIH  60
SMTSLSASTK RNAAAISVAR KNQKSTSSVG ANGFGKKKKK MLLPQDFLSP QYILSKVFRK  120
DGPPLGVEFD SIPSQAFHCK GSTESYPADE ECQRAAAKKR KVFELASIDH QNNSTESASV  180
KKHGMGKGLM TVWRVVNPEG GDIPTGIDIS NRQIVAPSQT SPVVRRQPPR NKRRQPLVSQ  240
MKQRSLEKKL QEKKRASIKR REVQSNKNDN QRQPRNEKCE LALDGTISNE RLDQLAMLVD  300
DEELELRELQ AGPNPLQCAD HLGTSGLLGC SLCKDLLAKF PPDSVKMKQP FSMQPWDSSP  360
ETVKKLFKVF HFLYTYSVTL DTCSFTLDEF AQAFHDKDSL LLGKIHVALL KLLLSDVEVE  420
LSGAVLPHFS LSCKFLALLH SVENQEFVVE FWKTSLNPLT WTEILRQVLV AAGFGSKQGL  480
LRREALNKEM SLMVRFGLRP GSLKSELFKI LSERGNNGLK VSDLALSLPV TELNLTSTTE  540
ELEELICSTL SSDITLFEKI SPSAYRLRCS SVAKDGNNCH SDTEDSGSVD DDSDDSSDDS  600
DHDSGNYYQR KFKHNNHHKG RNNMLTVHTE IDESHPGEVW LLGLMEGEYS DLSIEEKLNA  660
LVALIDLLSD GSSIRMENPG KAIVEYVPSI PHYGSGAKIK RSSSNRQNFP RPSWVYGGQR  720
NGVQVSHTSS DSRPVDSSAI TKSFEKERCS SSGQDAKQTE VGVYIHPMQS IFLGSDRRYN  780
RYWLFLGPCN AYDPGHRRIY FESSEDGHWE VIDTEEALRA LLAVLDDRGK REALLIESLE  840
KRETSLCQEM SSRHLHDAEI RNTPSYSPEM DAVREDSCSP VSDVDNLSLT VAMNESLTSC  900
CAIVLHAGKK GEEQNRMWRR LQEFDVWIWD YFYLNLNAVK HNKRSYLDSL TRCESCHDLY  960
WRDEKHCRIC HTTFEIDFDL EERYAIHVAT CREKGDNSTF PKFKVLPSQL QSLKAAVHAI  1020
ESFMPKDALV GAWTKSAHRL WVKRLRRTSS LSELLQVIAD FVAAINENWL NQCHIEQGGC  1080
TVIEEIIAFF PTMPQTSSAL ALWLVKLDEF IASYLKKIHS GTELENGTRS DRRAAKE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	100	GKKKKKM
2	152	160	QRAAAKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250\|UniProtKB:F4HY56}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016709596.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3-like isoform X1
Refseq	XP_016709597.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3-like isoform X1
Swissprot	F4JRF5	0.0	RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBL	A0A1U8L4N9	0.0	A0A1U8L4N9_GOSHI; homeobox-DDT domain protein RLT3-like isoform X1
STRING	Gorai.007G162700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9638	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator