PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1248
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 548aa    MW: 59921.4 Da    PI: 7.0703
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1248genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.47.3e-15357403455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++  L+el+P +      K +Ka++L  A+ Y+ksLq
  Gh_A11G1248 357 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDDAIAYLKSLQ 403
                  6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-20351419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.536353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.13E-15356407No hitNo description
Gene3DG3DSA:4.10.280.103.0E-20357411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-12357403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-16359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MNHCVPDFEM EDDYAILSPP SLTRVEKPPP RPEDEIMELL WQNGQVVMQS QNQRSMKKLP  60
SFKLLDADHS APREIRSSSP SHKHRRHHHQ EQQQLVTDHL FMQEDEMASW LHYPISDTNF  120
DHDFCSDLLY PPSSSPTAAV APCVSSTVAT STPPILKRVS QVSVSASANE SVPRPPVPPA  180
RRNELEPARI HNFSHFSRHI TARAEQSELS NSKSVMGEST VVDSSNTPAA APELRAAQAM  240
PSNTEAASGG NNNNNNNANA NMSAAGVPYL QSADVRLGAN KGILATCEVT VTSSPGGSSA  300
SAEPTAQKAA SAEDRKRKGR ELDEAECHSE NAEFESADTK KQTRGSTSAK RSRAAEVHNL  360
SERRRRDRIN EKMRALQELI PRCNKSDKAS MLDDAIAYLK SLQMQIQMMS MGCGMVPMFP  420
GVQQYISPMG IGMSMGMDMG IIRPMMSFPN VVAGSALPTL AAAAHLGPRI PMPAFHMPPS  480
IPAPDPSRFQ PSNQSDPIPN PLFMQNLNQA QQYIGLHQTM QIPHPQGQAM AQPSSRRGAE  540
KVENHPTG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1361366ERRRRD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6161970.0JX616197.1 Gossypium hirsutum clone NBRI_GE60666 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016710580.10.0PREDICTED: transcription factor PIF1-like isoform X1
TrEMBLA0A1U8L7K00.0A0A1U8L7K0_GOSHI; transcription factor PIF1-like isoform X1
STRINGGorai.007G151900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71082643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.34e-61phytochrome interacting factor 3-like 5