PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1199
Common NameERF10
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 225aa    MW: 25352.2 Da    PI: 4.7079
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1199genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-1885135255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr ++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+ +++g
  Gh_A11G1199  85 SYRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDSAEAAAIAYDQAAFSMKG 135
                  69*******.**********44465..************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.33E-1984144No hitNo description
PROSITE profilePS5103222.39285143IPR001471AP2/ERF domain
SMARTSM003803.6E-3785149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-2985144IPR001471AP2/ERF domain
PfamPF008473.3E-1285135IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2285145IPR016177DNA-binding domain
PRINTSPR003673.9E-108697IPR001471AP2/ERF domain
PRINTSPR003673.9E-10109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEEPTLFQNS TTPDFSPESS SFGCWDDLLP DYNISIPFNF NDLDEMIWMD SLGDGPKEST  60
ESSSTNSVRE EEVTSDANHP KKEKSYRGVR KRPWGKYAAE IRDSTRNGVR VWLGTFDSAE  120
AAAIAYDQAA FSMKGSLATL NFPVEVVRES LQDIKYRCEE GCSPVVALKK RHCLRKRSKS  180
SNKNTKQNVA PTPLQHQNLV VLEDLGADYL EQLLTSCETE TNVPW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2884146163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-2882146266ATERF1
3gcc_A4e-2882146266ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4302170.0KF430217.1 Gossypium hirsutum transcription factor ERF10 (ERF10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314148.11e-169ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y91e-68ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLU5YF921e-168U5YF92_GOSHI; Transcription factor ERF10
STRINGGorai.007G145800.11e-165(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22752876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-51ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Zhou Y, et al.
    Overexpression of a cotton gene that encodes a putative transcription factor of AP2/EREBP family in Arabidopsis affects growth and development of transgenic plants.
    PLoS ONE, 2013. 8(10): p. e78635
    [PMID:24194949]
  4. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]