PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A11G1198

Common Name

CBF21, ERF

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 127aa MW: 14349.9 Da PI: 9.1304

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G1198	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.1	1.3e-19	18	69	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+++AeIrdp+ ng +r +lg+f taeeAa+a+++a+ +++g+ Gh_A11G1198 18 RYRGIRRRP-WGKFAAEIRDPTRNG--ARLWLGTFETAEEAARAYDRAAFAFRGH 69 6******.******98887..***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.06E-30	18	77	No hit	No description
SuperFamily	SSF54171	1.11E-23	18	77	IPR016177	DNA-binding domain
SMART	SM00380	7.1E-37	18	82	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	25.291	18	76	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.5E-32	18	77	IPR001471	AP2/ERF domain
Pfam	PF00847	6.6E-14	18	69	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-11	19	30	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-11	42	58	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MEAPQGGKKS GDINAEVRYR GIRRRPWGKF AAEIRDPTRN GARLWLGTFE TAEEAARAYD 60 RAAFAFRGHS AILNFPNEHQ YQNSKFPPSS SSASSSATAR RTEVIEFECL DNKLLEDLLE 120 TQDKQRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-30	5	114	3	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC222015	0.0	KC222015.1 Gossypium hirsutum cultivar Zhongmiansuo 12 ethylene-responsive transcription factor (ERF) mRNA, complete cds.
GenBank	KP780204	0.0	KP780204.1 Gossypium hirsutum C-repeat binding factor 21 (CBF21) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016710838.1	2e-90	PREDICTED: ethylene-responsive transcription factor ERF098-like
Swissprot	Q9LTC5	1e-42	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A1U8LBU4	6e-89	A0A1U8LBU4_GOSHI; ethylene-responsive transcription factor ERF098-like
STRING	Gorai.007G145700.1	1e-75	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	2e-31	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]