PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1172
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 336aa    MW: 37322.3 Da    PI: 10.0569
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1172genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.6e-31271328359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  Gh_A11G1172 271 DDYSWRKYGQKPIKGSPHPRGYYKCSSIrGCPARKHVERCLEEPSMLIVTYEGEHNHP 328
                  99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.2E-18222267IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.7E-33257329IPR003657WRKY domain
PROSITE profilePS5081129.953264330IPR003657WRKY domain
SuperFamilySSF1182903.14E-27267329IPR003657WRKY domain
SMARTSM007741.6E-37269329IPR003657WRKY domain
PfamPF031066.2E-27271328IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEEVEEANKA AIESSHRVLS ILSQPQDEVS CRHLMAETGE AVFRFKRVVS LLNSGLGHAR  60
VRKLRKLQAP FPQSTLLDTP RCNPSASDYP SKNLHLGCHE SSVQELTSHA RKSLYLGNPS  120
LELSSNGKHP LQLSQKASLG HYHFLQKQHQ MKQQAEMMFR KSNSSGMNLN FDSSSCTPTM  180
SSTRSFLSSL SMDGSVTNLS GGGSAAFHLI GTHRSSDQSS QQKKCYGKAE DGSVKCGTSG  240
RCHCSKKRKH RMKRSIKVPA ISNKLADIPP DDYSWRKYGQ KPIKGSPHPR GYYKCSSIRG  300
CPARKHVERC LEEPSMLIVT YEGEHNHPRL PSQSTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-20262331775WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.222081e-109boll| ovule| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697980.0KF669798.1 Gossypium hirsutum WRKY transcription factor 47 (WRKY47) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628045.10.0PREDICTED: probable WRKY transcription factor 21 isoform X2
RefseqXP_017628046.10.0PREDICTED: probable WRKY transcription factor 21 isoform X2
RefseqXP_017628047.10.0PREDICTED: probable WRKY transcription factor 21 isoform X2
SwissprotO043361e-115WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A0B0N9D10.0A0A0B0N9D1_GOSAR; Putative WRKY transcription factor 21-like protein
STRINGGorai.007G142800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-107WRKY DNA-binding protein 21