PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A11G1150

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 446aa MW: 49559 Da PI: 9.4439

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G1150	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.6e-05	101	123	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Gh_A11G1150 101 FICEICNKGFQRDQNLQLHRRGH 123 89*******************88 PP
2	zf-C2H2	12.4	0.00049	177	199	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Gh_A11G1150 177 WKCEKCSKIYAVQSDWKAHSKTC 199 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.2E-5	100	123	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.02E-6	100	123	No hit	No description
Pfam	PF12171	5.2E-5	101	123	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.022	101	123	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.845	101	123	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	103	123	IPR007087	Zinc finger, C2H2
SMART	SM00355	260	142	172	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.0E-4	165	198	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.02E-6	172	197	No hit	No description
SMART	SM00355	170	177	197	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MFPAATMSSS TSLSEEANVS SGTRVQDFGG LNPIVTHQQL PQKIKKKRSL PGNPGTTFFL 60 SLPVFLFRLH VLVFNSFYSI TDPDAEVIAL SPKTLLATNR FICEICNKGF QRDQNLQLHR 120 RGHNLPWKLK QRNSKEVKKK AYVCPEPTCV HHHPSRALGD LTGIKKHYCR KHGEKKWKCE 180 KCSKIYAVQS DWKAHSKTCG TREYRCDCGT LFSRKDSFIT HRAFCDALAE ESARLSANQL 240 AAAANPALNP SSLFPFQNPW DPIQTSNPNP NGPLQVKPES HHLTPYFQEL PLPPPKALFT 300 SPFQSLHVSN NPPSNAAATS ATPQLSATAL LQKATTAGAT ATQIKNNNYY YSMATHLYPD 360 FSGFTAADLA TWQKSSDRFT RDFLGLTRDN QGGNGNVNLS MNPRDVLSYT GGVELQHFER 420 GQPLLRPQGF GFPEPYAATS ETWGDC

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MFPAATMSSS TSLSEEANVS SGTRVQDFGG LNPIVTHQQL PQKIKKKRSL PGNPGTTFFL  60
SLPVFLFRLH VLVFNSFYSI TDPDAEVIAL SPKTLLATNR FICEICNKGF QRDQNLQLHR  120
RGHNLPWKLK QRNSKEVKKK AYVCPEPTCV HHHPSRALGD LTGIKKHYCR KHGEKKWKCE  180
KCSKIYAVQS DWKAHSKTCG TREYRCDCGT LFSRKDSFIT HRAFCDALAE ESARLSANQL  240
AAAANPALNP SSLFPFQNPW DPIQTSNPNP NGPLQVKPES HHLTPYFQEL PLPPPKALFT  300
SPFQSLHVSN NPPSNAAATS ATPQLSATAL LQKATTAGAT ATQIKNNNYY YSMATHLYPD  360
FSGFTAADLA TWQKSSDRFT RDFLGLTRDN QGGNGNVNLS MNPRDVLSYT GGVELQHFER  420
GQPLLRPQGF GFPEPYAATS ETWGDC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-36	173	237	3	67	Zinc finger protein JACKDAW
5b3h_F	2e-36	173	237	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9393	0.0	boll\| ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM461724	1e-134	AM461724.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X124416.7, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016710836.1	0.0	PREDICTED: protein indeterminate-domain 12-like
Swissprot	O22759	1e-123	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A2P5S1Z7	0.0	A0A2P5S1Z7_GOSBA; Uncharacterized protein
STRING	Gorai.007G139800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-105	indeterminate(ID)-domain 12

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]