PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1120
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 627aa    MW: 70694 Da    PI: 5.9267
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1120genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.7e-14427473455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Gh_A11G1120 427 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 473
                  7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.6E-389169IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625423472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-19425491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-11427472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.74E-14427477No hitNo description
Gene3DG3DSA:4.10.280.105.0E-19427490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-17429478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MAVPPSNRLR NMLQAAVQSV QWTYSLLWQI CPQQGILVWS DGYYNGAIKT RKTVQPMEVS  60
AEEASLQRSQ QLRELYDSLS AGESNQTVRR PSAPLSPEDL TESEWFYLMC VSFSFPPGVG  120
LPGKAYARRQ HVWLTGASEV DSKIFSRAIL AKVLLRHCLL LTVLCIAVHD DDVIRNPKPA  180
LSEHSTSNPA DYTRFHSPAL PPTYAAANPN LDGNDDEEEE EGPESDCAET DRNSRRMVRV  240
AAEPSELMMQ LEMSEDMRLG LPDDASNNLD TDIQMAGVSQ ADKQRRAESF KAELCRRWEM  300
VQEEEAANSG IESRYSGLLP MDGLAQENTH YSQTVSAILQ GQPTPWADSL PTYSTESAFS  360
KWTIRSDLHQ LPVAFEGASS QWLLKYILFS VPFLHSKYRD ENSPKARDAD AAARFRKGTP  420
QEELSANHVL AERRRREKLN ERFIILRSLV PFVTKMDKAS ILGDTIEYVK QLRKKIQELE  480
TRNKEIEAHN ERPRSADSLQ RSGVTVLERA RSLGPEPGRE KRKVRIVTGS GGEARPKKTQ  540
PETVVEVSII ESDALLELQC EYKEGLLVDI MRMLREQLRI EIMTVQSSLN NGTFAAELRA  600
KVKDNVNGKK VSITEVKWAI NQMIPSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A3e-15718546221Transcription factor MYC3
4ywc_A3e-15718546221Transcription factor MYC3
4ywc_B3e-15718546221Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1431436ERRRRE
2432437RRRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.59960.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6988580.0KP698858.1 Gossypium arboreum basic helix-loop-helix protein 130A (bHLH130A) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490556.10.0PREDICTED: basic helix-loop-helix protein A-like isoform X2
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A0G2UY840.0A0A0G2UY84_GOSAR; Basic helix-loop-helix protein 130A
STRINGGorai.007G136400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94222836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-73bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]