PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1115
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 338aa    MW: 37880.1 Da    PI: 4.6668
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1115genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH185.3e-06212238531
                  HHHHHHHHHHHHHHHHHHHHCTSCCC. CS
          HLH   5 hnerErrRRdriNsafeeLrellPkas 31 
                  + +++r+RR ri +++  L+ellP++s
  Gh_A11G1115 212 AAAIDRQRRLRIDESIKALQELLPSSS 238
                  5799*********************83 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.563207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-9209266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-9209265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.00E-5209261No hitNo description
SMARTSM003530.0058213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDGQPGHENP LMSLNSDGSV NEFPYDYVDD TNPVLLTPRG RNTNQPSLQS LSQWIDCPKT  60
PHSYVEFLTE NLEKLPTADV LESIGSPIGG IHAVDGVSEI QRELLHGNEG KAFSSGPDGY  120
SLEAGQWNLK LSAYPTEINN HEASASERFL SRNSSSEYEF HAQLCVFQQN HASWMQKPEA  180
EDCNVSHLQS KETISAPSFQ SQPQYHAPKS RAAAIDRQRR LRIDESIKAL QELLPSSSER  240
GLGNALDDII DYVKFLQLQV KELSRSRLGG EPTSNPFVFF EGYGHYVLHE QMINEPLEEM  300
MAKLLEINPS AATQLLESRG LYMMPRALVD DFCTESHR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5892029e-93JX589202.1 Gossypium hirsutum clone NBRI_GE23854 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016708477.10.0PREDICTED: transcription factor bHLH7-like
RefseqXP_016708478.10.0PREDICTED: transcription factor bHLH7-like
TrEMBLA0A1U8L5320.0A0A1U8L532_GOSHI; transcription factor bHLH7-like
STRINGGorai.007G135600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.13e-21LJRHL1-like 2