PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A11G1062

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 573aa MW: 63131.3 Da PI: 9.1982

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G1062	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	107	129	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Gh_A11G1062 107 FVCEICNKGFQRDQNLQLHRRGH 129 89*******************88 PP
2	zf-C2H2	15.4	5.3e-05	183	205	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ Gh_A11G1062 183 WKCDKCSKKYAVQSDWKAHQKTC 205 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.01E-8	106	129	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.9E-5	106	129	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	107	129	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	107	129	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	109	129	IPR007087	Zinc finger, C2H2
SMART	SM00355	98	148	178	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.6E-5	171	204	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.01E-8	178	204	No hit	No description
SMART	SM00355	94	183	203	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 573 aa Download sequence Send to blast
MKIKETDKLS TLSLYFLVSS QFQMSKISGD DGSLSSGNTG EEVHQLLLKN NFPPASVSNI 60 NSSSSQQPQP QPQPQPPYII VVLSMKPDPN AEVIALSPTT LMATNRFVCE ICNKGFQRDQ 120 NLQLHRRGHN LPWKLRQRTT TEVKKRVYIC PEPTCVHHNP ARALGDLTGI KKHFSRKHGE 180 KKWKCDKCSK KYAVQSDWKA HQKTCGTKEY KCDCGTIFSR RDSFITHRAF CDAIAEENIK 240 VNQGLMNNAG SNLQNQMPDL LMSSMPMCND NTFTGISDFN NFDSKSTPLK SLSQELVPMP 300 FKSMNIGGGM FSSNSGTLFG TTRSISSASS SLQLSSNGSS GFNYLQDTKK GRQIAGSPHM 360 SATALLQKAA QMGATASNSI NSPMMQTSFA SSMAGPYQAI RPPTFGGIQQ QNISNYDQFP 420 SQTDQSSMVG ISEGFSNQLM QKSPNEFAQL FQGSSAMNEM GMLTNMLISG VDRNQGLMKN 480 VEHEGSGSSY NLLQRRKPTG PSIYGASSGG GNMTTLDFMG IGGSRPTNLH EQQHLQQRLE 540 LEAISQQRLP MMNPFQQQYS HGDSTIEKPI WDV

Sequence ? help Back to Top

Protein Sequence Length: 573 aa Download sequence Send to blast

MKIKETDKLS TLSLYFLVSS QFQMSKISGD DGSLSSGNTG EEVHQLLLKN NFPPASVSNI  60
NSSSSQQPQP QPQPQPPYII VVLSMKPDPN AEVIALSPTT LMATNRFVCE ICNKGFQRDQ  120
NLQLHRRGHN LPWKLRQRTT TEVKKRVYIC PEPTCVHHNP ARALGDLTGI KKHFSRKHGE  180
KKWKCDKCSK KYAVQSDWKA HQKTCGTKEY KCDCGTIFSR RDSFITHRAF CDAIAEENIK  240
VNQGLMNNAG SNLQNQMPDL LMSSMPMCND NTFTGISDFN NFDSKSTPLK SLSQELVPMP  300
FKSMNIGGGM FSSNSGTLFG TTRSISSASS SLQLSSNGSS GFNYLQDTKK GRQIAGSPHM  360
SATALLQKAA QMGATASNSI NSPMMQTSFA SSMAGPYQAI RPPTFGGIQQ QNISNYDQFP  420
SQTDQSSMVG ISEGFSNQLM QKSPNEFAQL FQGSSAMNEM GMLTNMLISG VDRNQGLMKN  480
VEHEGSGSSY NLLQRRKPTG PSIYGASSGG GNMTTLDFMG IGGSRPTNLH EQQHLQQRLE  540
LEAISQQRLP MMNPFQQQYS HGDSTIEKPI WDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-34	179	248	3	72	Zinc finger protein JACKDAW
5b3h_F	2e-34	179	248	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269\|PubMed:25035403}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016708704.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9SCQ6	1e-107	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A1U8L6D1	0.0	A0A1U8L6D1_GOSHI; protein indeterminate-domain 2-like
STRING	Gorai.007G130100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15443	8	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	8e-98	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]