PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0886
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 739aa    MW: 82634.8 Da    PI: 6.9705
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0886genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.69.8e-23129229198
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f k+lt sd++++g +++ +k+a+e+      ++ ++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +++el
  Gh_A11G0886 129 FSKILTASDTSTHGGFSVLRKHATEClppldmNLATP-TQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGDNGEL 223
                  889***************************9744444.459************************************************..3489999 PP

                  EEEEE- CS
           B3  93 vvkvfr 98 
                  +v+v+r
  Gh_A11G0886 224 RVGVRR 229
                  ****98 PP

2Auxin_resp103.52.6e-34255334183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aaha++t++ F v+Y+P+  ts+F++ v+k+++a+++ +svGmRfkm+fe+eds+err++Gt+vgv d++p +W++SkWrsLk
  Gh_A11G0886 255 AAHAVTTHTLFVVYYKPS--TSQFIIGVNKYLEAINNGFSVGMRFKMRFEGEDSPERRFTGTIVGVGDISP-HWSESKWRSLK 334
                  79***************8..59***********************************************99.*********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-39114258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-39121244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.66E-20127229No hitNo description
SMARTSM010199.3E-22129231IPR003340B3 DNA binding domain
PfamPF023621.1E-20129229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.28129231IPR003340B3 DNA binding domain
PfamPF065071.3E-31255334IPR010525Auxin response factor
PfamPF023096.4E-7557617IPR033389AUX/IAA domain
SuperFamilySSF542774.58E-12572657No hitNo description
PROSITE profilePS5174524.055581673IPR000270PB1 domain
PfamPF023094.4E-6622669IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MAHLEGNQRG SSTAHAVSGS AGDDLYQELW KLCAGPLVEI PRVHERVFYF PQGHMEQLEA  60
STNQELSNQT PLFNLPSKIL CRVLHVELLA EQETDEVYAQ ITLQPEDQSE PTSLDPFPTE  120
APKRTVHSFS KILTASDTST HGGFSVLRKH ATECLPPLDM NLATPTQELV AKDLHGYEWR  180
FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DAFVFLRGDN GELRVGVRRL ARQQSTMPSS  240
VISSQSMHLG VLATAAHAVT THTLFVVYYK PSTSQFIIGV NKYLEAINNG FSVGMRFKMR  300
FEGEDSPERR FTGTIVGVGD ISPHWSESKW RSLKIQWDEP AAIQRPERVS PWEIEPFVDS  360
ASANLQPTIM CKRPRPVDIP ASEITTSSAG SAFWCRESIQ PHELTPVGST LEVQSSENQV  420
MCPMRQKEAD NCLINGNGGY KSRTPPENAW PPSPLVNVSL NLFPDSMENN YKTGALQTAL  480
TGYAKSLMHD QVVKRKTETF TGCRLFGFNL TDSTSVAAPP DKEQMSTSID YNGVRGPIPA  540
AFHVEQKPET SKEQKQVASE TSTQEMQAKQ GSATSMRSRT KENFTVHMQG IAVGRAVDLT  600
ALKGYNDLIN ELEKMFEIKG ELCRSGQWSI VFTDDEGDMM LVGDDPWVEF CKMVRKIFIY  660
SSEEVKKIST RCKFPAASME CEGTVVSLDS EHSAEKRKWQ EFKLGILIPK FHGIIASFRG  720
RKMVRGKFTF QEFGSLVQC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1671935713355Auxin response factor 1
4ldw_A1e-1671935713355Auxin response factor 1
4ldw_B1e-1671935713355Auxin response factor 1
4ldx_A1e-1671935713355Auxin response factor 1
4ldx_B1e-1671935713355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371375KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.190125e-94boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5670006e-40AJ567000.1 Gossypium hirsutum microsatellite DNA mGhCIR051, clone CIR051.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016710167.10.0PREDICTED: auxin response factor 18-like isoform X2
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLA0A1U8L6D50.0A0A1U8L6D5_GOSHI; Auxin response factor
STRINGGorai.007G109500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27642762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.10.0auxin response factor 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]