PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0828
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 313aa    MW: 34646.2 Da    PI: 9.843
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0828genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-1363107147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
      Gh_A11G0828  63 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 107
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.27E-1657113IPR009057Homeodomain-like
PROSITE profilePS5129415.37358112IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-660116IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-1861110IPR006447Myb domain, plants
SMARTSM007175.3E-1162110IPR001005SANT/Myb domain
PfamPF002492.5E-1163107IPR001005SANT/Myb domain
CDDcd001671.81E-865108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MVSVSPNPAP GFYFFDPMNM GLPGLSSLRP ANAVAPPPPT TGSPYLEDPS KKIRKPYTIT  60
KSRESWTEQE HDKFLEALQL FDRDWKKIEA FVGSKTVIQI RSHAQKYFLK AQKNGATEHV  120
PPPRPKRKSA HPYPQKAPKN AAVVPQVVGP FQSSSALLES GYTYRLDSSS VLEKPIAKGA  180
WSSRGYDSVP PVTVSQRTKD DATFAGPNIA PNCCYSSSKE STPSIWSFGE TIAQGDHRKQ  240
SRVVPDFSQV YTFLGSVFDP GASGHLQILK QMDRINVETV VLLMRNLATN LKSPEFEDQR  300
RLLSTYDAES RGG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6151111e-107JX615111.1 Gossypium hirsutum clone NBRI_GE58935 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016709501.10.0PREDICTED: protein REVEILLE 5-like
SwissprotC0SVG51e-100RVE5_ARATH; Protein REVEILLE 5
TrEMBLA0A1U8L4D60.0A0A1U8L4D6_GOSHI; protein REVEILLE 5-like
STRINGGorai.007G102900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.11e-103MYB_related family protein
Publications ? help Back to Top
  1. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]