PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0794
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BES1
Protein Properties Length: 345aa    MW: 38102.2 Da    PI: 5.4239
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0794genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822141.48.6e-44662051133
       DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl.eeaeaagssas..aspes 92 
                  gg++r+++ +E+E++k+RER+RRa++a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +gs+p  ++++   ss s   s+++
  Gh_A11G0794  66 GGARRSRPLEEKERTKLRERHRRALTARILAGLRKHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGSRPAgDSSAGLTSSFSemLSQQA 163
                  6899*****************************************************************98888999997444444333332466777 PP

       DUF822  93 slq.sslkssalaspvesysaspksssfpspssldsislasa 133
                  + + ++ +ss   + ve  ++ +k + +p p+ +d  s+ ++
  Gh_A11G0794 164 PPTsLQGVSSGYCALVEYNACHMKGVFMPTPAPYDLSSSGHS 205
                  66667889999***********************98876543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.0E-3868204IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514454.96E-28248334IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.808.3E-33251340IPR013781Glycoside hydrolase, catalytic domain
PfamPF013734.3E-15257337IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-8288302IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-8309327IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MQKLIGANEE DDEEEIEMDV KEEDNENGQK HISAQMMLGA DGVMPSTSHQ FQIQQQLQEQ  60
VSTPGGGARR SRPLEEKERT KLRERHRRAL TARILAGLRK HGNYNLRVRA DINDVIAALA  120
REAGWVVLPD GTTFPSRSQG SRPAGDSSAG LTSSFSEMLS QQAPPTSLQG VSSGYCALVE  180
YNACHMKGVF MPTPAPYDLS SSGHSQSSGM VGNGGEQTES LPLIAGSMEV INDKQIIGLP  240
PKLPERDFAG TPYVPVYVML PLGVVNMKCE LVDPDGLLKQ LRVLKSINVD GVMIDCWWGI  300
VEAHAPQEYN WNGYRKLFQM VHELKLKLQA HLFLQECYNS IQAEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bya_A3e-252533371195BETA-AMYLASE
1byb_A3e-252533371195BETA-AMYLASE
1byc_A3e-252533371195BETA-AMYLASE
1byd_A3e-252533371195BETA-AMYLASE
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016710485.10.0PREDICTED: beta-amylase 7-like isoform X1
SwissprotO808311e-129BAM7_ARATH; Beta-amylase 7
TrEMBLA0A0B0P6330.0A0A0B0P633_GOSAR; Beta-amylase
STRINGGorai.007G099100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29452535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.11e-106beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]