PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A11G0777

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 820aa MW: 89038.1 Da PI: 6.3725

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G0777	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.1	4.6e-21	119	174	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k Gh_A11G0777 119 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 174 688999***********************************************999 PP
2	START	218.6	2.1e-68	326	550	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 ela++a++elvk+a+ +ep+W +s e++n+de+l++f++ + + +ea+r+sg+v+ ++ lve+l+d++ +W+e+++ + +t++vi Gh_A11G0777 326 ELALAAMNELVKMAQTDEPLWIRSLeggrEILNQDEYLRTFTPCIGmksngFVTEASRESGMVIINSLALVETLMDSN-RWSEMFPcmiaRTSTTDVI 422 5899************************************9888999999**********************.*************** PP CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS START 86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176 s g galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvSvd +++ + +s+v +++lpSg+++++++ng+skvtwveh+++++++ Gh_A11G0777 423 SGGvggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHVEGVWAVVDVSVDTNRETSGAPSFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYEESQ 520 *****************************************************999********************************** PP XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 177 phwllrslvksglaegaktwvatlqrqcek 206 +h+l+++l++sg+a+ga++wvatlqrqce+ Gh_A11G0777 521 VHQLYHPLLRSGMAFGAQRWVATLQRQCEC 550 **************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.2E-20	102	176	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-21	106	176	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.216	116	176	IPR001356	Homeobox domain
SMART	SM00389	9.9E-18	117	180	IPR001356	Homeobox domain
CDD	cd00086	1.32E-18	118	176	No hit	No description
Pfam	PF00046	1.4E-18	119	174	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	151	174	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	45.382	317	553	IPR002913	START domain
SuperFamily	SSF55961	1.33E-34	319	550	No hit	No description
CDD	cd08875	5.67E-127	321	549	No hit	No description
SMART	SM00234	1.9E-56	326	550	IPR002913	START domain
Pfam	PF01852	3.5E-60	326	550	IPR002913	START domain
SuperFamily	SSF55961	6.28E-24	578	813	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 820 aa Download sequence Send to blast
MSFGGFLDNS TGGGFGGARM VADIPYSNNM ATGATAIAQP RLMSPSLPKN IFNSPGLSLA 60 LQPNIDNQGD HGSRIMRESL EGSVGRRSRE EEHESRSGSD NMDGASGDDQ DAADKPPRKK 120 RYHRHTPQQI QELEALFKEC PHPDEKQRLE LSKRLCLETR QVKFWFQNRR TQMKTQLERH 180 ENSLLRQEND KLRAENMSIR DAMRNPICTN CGGPAIIGDI SLEEQHLRIE NARLKDELDR 240 VCALAGKFLG RPISTLATSI APPLPNSSLE LGVGSNGFGA LSTVATTLPL GPDFGGGMSN 300 ALVPPSRPTT AVTGLDRSVE RSMFLELALA AMNELVKMAQ TDEPLWIRSL EGGREILNQD 360 EYLRTFTPCI GMKSNGFVTE ASRESGMVII NSLALVETLM DSNRWSEMFP CMIARTSTTD 420 VISGGVGGTR NGALQLMHAE LQVLSPLVPV REVNFLRFCK QHVEGVWAVV DVSVDTNRET 480 SGAPSFVNCR RLPSGCVVQD MPNGYSKVTW VEHAEYEESQ VHQLYHPLLR SGMAFGAQRW 540 VATLQRQCEC LAILMSSSVP TRDHTGITAS GRRSMLKLAQ RMTDNFCAGV CASTVHKWNK 600 LNVGNVDEDV RVMTRKSVDD PGEPPGIVLS AATSVWLPVS PQRLFDFLRD ERLRSEWDIL 660 SNGGPMQEMA HIAKGQDHGN CVSLLRASAM NANQSSMLIL QETCIDAAGS LVVYAPVDIP 720 AMHVVMNGGD SAYVALLPSG FAIVPDGPGS RGPTSNGQVN GNGSGGGGAE RVGGSLLTVA 780 FQILVNSLPT AKLTVESVET VNNLISCTVQ KIKAALQCES

Sequence ? help Back to Top

Protein Sequence Length: 820 aa Download sequence Send to blast

MSFGGFLDNS TGGGFGGARM VADIPYSNNM ATGATAIAQP RLMSPSLPKN IFNSPGLSLA  60
LQPNIDNQGD HGSRIMRESL EGSVGRRSRE EEHESRSGSD NMDGASGDDQ DAADKPPRKK  120
RYHRHTPQQI QELEALFKEC PHPDEKQRLE LSKRLCLETR QVKFWFQNRR TQMKTQLERH  180
ENSLLRQEND KLRAENMSIR DAMRNPICTN CGGPAIIGDI SLEEQHLRIE NARLKDELDR  240
VCALAGKFLG RPISTLATSI APPLPNSSLE LGVGSNGFGA LSTVATTLPL GPDFGGGMSN  300
ALVPPSRPTT AVTGLDRSVE RSMFLELALA AMNELVKMAQ TDEPLWIRSL EGGREILNQD  360
EYLRTFTPCI GMKSNGFVTE ASRESGMVII NSLALVETLM DSNRWSEMFP CMIARTSTTD  420
VISGGVGGTR NGALQLMHAE LQVLSPLVPV REVNFLRFCK QHVEGVWAVV DVSVDTNRET  480
SGAPSFVNCR RLPSGCVVQD MPNGYSKVTW VEHAEYEESQ VHQLYHPLLR SGMAFGAQRW  540
VATLQRQCEC LAILMSSSVP TRDHTGITAS GRRSMLKLAQ RMTDNFCAGV CASTVHKWNK  600
LNVGNVDEDV RVMTRKSVDD PGEPPGIVLS AATSVWLPVS PQRLFDFLRD ERLRSEWDIL  660
SNGGPMQEMA HIAKGQDHGN CVSLLRASAM NANQSSMLIL QETCIDAAGS LVVYAPVDIP  720
AMHVVMNGGD SAYVALLPSG FAIVPDGPGS RGPTSNGQVN GNGSGGGGAE RVGGSLLTVA  780
FQILVNSLPT AKLTVESVET VNNLISCTVQ KIKAALQCES

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9333	0.0	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269\|PubMed:10402424}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016748231.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A1U8PAK0	0.0	A0A1U8PAK0_GOSHI; homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
STRING	Gorai.007G096000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1128	27	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]