PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A11G0692

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 302aa MW: 33453.3 Da PI: 6.6672

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G0692	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.3	2.7e-18	140	194	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +++ LA++l+L rqV vWFqNrRa+ k Gh_A11G0692 140 RKKLRLSKEQSLVLEETFKEHSTLNPKQKLALAMQLNLRPRQVEVWFQNRRARTK 194 788899***********************************************98 PP
2	HD-ZIP_I/II	125.3	2.8e-40	140	229	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+ +LEe+F+e+++L+p++K +la +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+ke +eLr +l Gh_A11G0692 140 RKKLRLSKEQSLVLEETFKEHSTLNPKQKLALAMQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEAQELR-AL 229 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	9.0E-32	1	109	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	2.7E-18	114	197	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.42E-19	124	197	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.006	136	196	IPR001356	Homeobox domain
SMART	SM00389	3.6E-15	138	200	IPR001356	Homeobox domain
CDD	cd00086	1.90E-14	140	197	No hit	No description
Pfam	PF00046	8.2E-16	140	194	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	171	194	IPR017970	Homeobox, conserved site
SMART	SM00340	1.2E-24	196	239	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.2E-10	196	230	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MDDKDDGLGL SLSLGRAQNQ PSLKLNLMPL ASPCMQNHQQ RNIWNELFQS SGMFLSPFLF 60 TNGQLETRSF AGGIDVNQAP ALAECEEEDG VSSPNSTVSS ISGKRNERDP VGDETEAERQ 120 SFSRSSDDED GGGAGDDASR KKLRLSKEQS LVLEETFKEH STLNPKQKLA LAMQLNLRPR 180 QVEVWFQNRR ARTKLKQTEV DCEYLKRCCD NLTEENRRLQ KEAQELRALK LSPQLYTHIN 240 PPTTLTMCPS CERVAVASSS SSSLADSSAP NSKHQRPVPA SSWAALPSPV THRPFNAPAS 300 RP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	144	SRKKLRL
2	188	196	RRARTKLKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.23406	0.0	boll

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016695327.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT3-like
Swissprot	P46602	1e-99	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBL	A0A1U8JYH1	0.0	A0A1U8JYH1_GOSHI; homeobox-leucine zipper protein HAT3-like
STRING	Gorai.007G086600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2577	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44910.1	3e-80	homeobox-leucine zipper protein 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]