PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A11G0633 | ||||||||
Common Name | NAC12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 318aa MW: 36112 Da PI: 8.2564 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.7 | 3.6e-56 | 16 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL kkv ++ +++ +i evd++k+ePwdLp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++ Gh_A11G0633 16 LPPGFRFHPTDEELITHYLSKKVVDSFFSA-IAIGEVDLNKCEPWDLPWRAKMGEKEWYFFCVRDRKYPTGLRTNRATDAGYWKATGKDKEIFK-GKS 111 79*************************999.88***************888999****************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfykgrapkg+kt+Wvmhe+rle Gh_A11G0633 112 LVGMKKTLVFYKGRAPKGQKTNWVMHEFRLE 142 ****************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-62 | 12 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.099 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-29 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 318 aa Download sequence Send to blast |
MENVSSFRNE DEQMELPPGF RFHPTDEELI THYLSKKVVD SFFSAIAIGE VDLNKCEPWD 60 LPWRAKMGEK EWYFFCVRDR KYPTGLRTNR ATDAGYWKAT GKDKEIFKGK SLVGMKKTLV 120 FYKGRAPKGQ KTNWVMHEFR LEGQYSVYNL PKTAKNEWVI CRVFQKSPNG KKVHISGLPP 180 LMDPSPHTSE ARTVVGAGET SNVTCFSDPI EDRKAVEEMM DSFDTSLVPC SSSSVNSLQK 240 ASYTTNQIKS NMGNLQYPDC FWIQEPSLLK TLIQSQGGRS KQNLKPEFSQ DSTVSNPEMI 300 QLPSCSAGAI NLGYFWGY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-54 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-54 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-54 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-54 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-54 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-54 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.20529 | 0.0 | boll| ovule |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JQ914143 | 0.0 | JQ914143.1 Gossypium hirsutum NAC domain protein 12 (NAC12) mRNA, complete cds. | |||
GenBank | KJ507138 | 0.0 | KJ507138.1 Gossypium hirsutum subsp. latifolium isolate L185 NAC12 L-protein (NAC12) mRNA, complete cds. | |||
GenBank | KJ507139 | 0.0 | KJ507139.1 Gossypium hirsutum subsp. latifolium isolate L123 NAC12 L-protein (NAC12) mRNA, complete cds. | |||
GenBank | KJ507164 | 0.0 | KJ507164.1 Gossypium hirsutum subsp. latifolium isolate L20 NAC12 L-protein (NAC12) mRNA, complete cds. | |||
GenBank | KJ507169 | 0.0 | KJ507169.1 Gossypium hirsutum isolate CCRI10 NAC12 L-protein (NAC12) mRNA, complete cds. | |||
GenBank | KJ507173 | 0.0 | KJ507173.1 Gossypium hirsutum isolate Han2490 NAC12 L-protein (NAC12) mRNA, complete cds. | |||
GenBank | KJ507177 | 0.0 | KJ507177.1 Gossypium hirsutum isolate Xiazao1 NAC12 L-protein (NAC12) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001314138.1 | 0.0 | NAC domain-containing protein 92-like | ||||
Swissprot | Q9FLJ2 | 1e-118 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A0B5H4K0 | 0.0 | A0A0B5H4K0_GOSHI; NAC12 L-protein | ||||
TrEMBL | U5IJN4 | 0.0 | U5IJN4_GOSHI; NAC domain protein 12 | ||||
STRING | Gorai.007G079900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-117 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
---|---|---|---|
|