PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0633
Common NameNAC12
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 318aa    MW: 36112 Da    PI: 8.2564
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0633genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.73.6e-56161421129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGfrFhPtdeel+++yL kkv ++ +++  +i evd++k+ePwdLp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++
  Gh_A11G0633  16 LPPGFRFHPTDEELITHYLSKKVVDSFFSA-IAIGEVDLNKCEPWDLPWRAKMGEKEWYFFCVRDRKYPTGLRTNRATDAGYWKATGKDKEIFK-GKS 111
                  79*************************999.88***************888999****************************************.999 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrle 129
                  lvg+kktLvfykgrapkg+kt+Wvmhe+rle
  Gh_A11G0633 112 LVGMKKTLVFYKGRAPKGQKTNWVMHEFRLE 142
                  ****************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-6212166IPR003441NAC domain
PROSITE profilePS5100559.09916166IPR003441NAC domain
PfamPF023653.3E-2917141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MENVSSFRNE DEQMELPPGF RFHPTDEELI THYLSKKVVD SFFSAIAIGE VDLNKCEPWD  60
LPWRAKMGEK EWYFFCVRDR KYPTGLRTNR ATDAGYWKAT GKDKEIFKGK SLVGMKKTLV  120
FYKGRAPKGQ KTNWVMHEFR LEGQYSVYNL PKTAKNEWVI CRVFQKSPNG KKVHISGLPP  180
LMDPSPHTSE ARTVVGAGET SNVTCFSDPI EDRKAVEEMM DSFDTSLVPC SSSSVNSLQK  240
ASYTTNQIKS NMGNLQYPDC FWIQEPSLLK TLIQSQGGRS KQNLKPEFSQ DSTVSNPEMI  300
QLPSCSAGAI NLGYFWGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-541317214171NO APICAL MERISTEM PROTEIN
1ut4_B3e-541317214171NO APICAL MERISTEM PROTEIN
1ut7_A3e-541317214171NO APICAL MERISTEM PROTEIN
1ut7_B3e-541317214171NO APICAL MERISTEM PROTEIN
3swm_A4e-541317217174NAC domain-containing protein 19
3swm_B4e-541317217174NAC domain-containing protein 19
3swm_C4e-541317217174NAC domain-containing protein 19
3swm_D4e-541317217174NAC domain-containing protein 19
3swp_A4e-541317217174NAC domain-containing protein 19
3swp_B4e-541317217174NAC domain-containing protein 19
3swp_C4e-541317217174NAC domain-containing protein 19
3swp_D4e-541317217174NAC domain-containing protein 19
4dul_A3e-541317214171NAC domain-containing protein 19
4dul_B3e-541317214171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.205290.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9141430.0JQ914143.1 Gossypium hirsutum NAC domain protein 12 (NAC12) mRNA, complete cds.
GenBankKJ5071380.0KJ507138.1 Gossypium hirsutum subsp. latifolium isolate L185 NAC12 L-protein (NAC12) mRNA, complete cds.
GenBankKJ5071390.0KJ507139.1 Gossypium hirsutum subsp. latifolium isolate L123 NAC12 L-protein (NAC12) mRNA, complete cds.
GenBankKJ5071640.0KJ507164.1 Gossypium hirsutum subsp. latifolium isolate L20 NAC12 L-protein (NAC12) mRNA, complete cds.
GenBankKJ5071690.0KJ507169.1 Gossypium hirsutum isolate CCRI10 NAC12 L-protein (NAC12) mRNA, complete cds.
GenBankKJ5071730.0KJ507173.1 Gossypium hirsutum isolate Han2490 NAC12 L-protein (NAC12) mRNA, complete cds.
GenBankKJ5071770.0KJ507177.1 Gossypium hirsutum isolate Xiazao1 NAC12 L-protein (NAC12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314138.10.0NAC domain-containing protein 92-like
SwissprotQ9FLJ21e-118NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0B5H4K00.0A0A0B5H4K0_GOSHI; NAC12 L-protein
TrEMBLU5IJN40.0U5IJN4_GOSHI; NAC domain protein 12
STRINGGorai.007G079900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-117NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Shah ST, et al.
    Isolation and expression profiling of GhNAC transcription factor genes in cotton (Gossypium hirsutum L.) during leaf senescence and in response to stresses.
    Gene, 2013. 531(2): p. 220-34
    [PMID:24036432]