PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A11G0628

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 510aa MW: 55381.2 Da PI: 5.9048

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G0628	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.5e-39	146	206	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Gh_A11G0628 146 PTKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 206 67899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-32	128	203	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.0E-32	148	204	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	150	204	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	152	188	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence Send to blast
MSEPKDPAIK LFGKMIPLPE KSPKVATADF SATCADDNTD LSCSTNSSPE ENKGEEREAE 60 KDTVGAKTTD VEHEVADRKE EEGSKQDDGA PPVTSGESTN LEANSGASDN SKTPSSEKES 120 TALKTSKTEE DQSETSNPQE KTLKKPTKIL PCPRCNSMDT KFCYYNNYNV NQPRHFCKNC 180 QRYWTAGGTM RNVPVGAGRR KNKNSASHYR QVTVSEALQN ARIDIPNGVH HPALKANGTV 240 LTFGSDAPLC ESMASVLNLA DKTMHNTTRN GFHRPEELKI PVSYKDGENG VECSNGSSVP 300 TSKDEAGKSG LQDRMMQNCQ GFPPQMQCYP GALWPYPWNS AQWSSPVPPP PPAFCPPGCY 360 PMPFYPAAAY WGCTVPGTWN GPWHPQPSPS KQSASSSGPD SPTLGKHSRD ENMSKPSNSG 420 EEEQVKENNA ERSLWIPKTL RIDDPGEAAK SSIWATLGIK NDKSDSIGGG GLFKAFQSKG 480 DERTEVPETS PVLQANPAAL SRSINFRESS

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence Send to blast

MSEPKDPAIK LFGKMIPLPE KSPKVATADF SATCADDNTD LSCSTNSSPE ENKGEEREAE  60
KDTVGAKTTD VEHEVADRKE EEGSKQDDGA PPVTSGESTN LEANSGASDN SKTPSSEKES  120
TALKTSKTEE DQSETSNPQE KTLKKPTKIL PCPRCNSMDT KFCYYNNYNV NQPRHFCKNC  180
QRYWTAGGTM RNVPVGAGRR KNKNSASHYR QVTVSEALQN ARIDIPNGVH HPALKANGTV  240
LTFGSDAPLC ESMASVLNLA DKTMHNTTRN GFHRPEELKI PVSYKDGENG VECSNGSSVP  300
TSKDEAGKSG LQDRMMQNCQ GFPPQMQCYP GALWPYPWNS AQWSSPVPPP PPAFCPPGCY  360
PMPFYPAAAY WGCTVPGTWN GPWHPQPSPS KQSASSSGPD SPTLGKHSRD ENMSKPSNSG  420
EEEQVKENNA ERSLWIPKTL RIDDPGEAAK SSIWATLGIK NDKSDSIGGG GLFKAFQSKG  480
DERTEVPETS PVLQANPAAL SRSINFRESS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.12011	0.0	ovule

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016710473.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	A0A1U8LAR7	0.0	A0A1U8LAR7_GOSHI; cyclic dof factor 3-like
STRING	Gorai.007G079300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5441	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-105	cycling DOF factor 2