PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G0613 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 332aa MW: 37993.1 Da PI: 9.4732 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 97.4 | 2.1e-30 | 53 | 195 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksgy 82 lp G++F+P+d el+ ++L++k+ + ++++ +++e +i++++P++Lp vk++ ++++fF+++ ++ya g+rk+r ++ + Gh_A11G0613 53 LPIGVKFDPSDIELL-QHLAAKCGIGDlkphpfIDEFIpTLNEDqGICYTHPQNLP-GVKKDGSSIHFFHQTINAYAIGQRKRRRiqnrhstiEEHVR 148 699************.99****988886665442222222333337**********.67788899*****************9975666666555899 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+k+v++ +g +g kk++v+y ++r++k+ek++Wvmh+y+l Gh_A11G0613 149 WHKTGKTKPVIE-NGVRKGWKKIMVLYkrSNRTHKPEKSNWVMHQYHL 195 ************.999***********5446899999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-34 | 38 | 214 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.311 | 53 | 214 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-13 | 54 | 195 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MASRSWFIDS RSIAKKVKNA IQITDTDCGA IRECPNCHHR IDNSDVSPQW PGLPIGVKFD 60 PSDIELLQHL AAKCGIGDLK PHPFIDEFIP TLNEDQGICY THPQNLPGVK KDGSSIHFFH 120 QTINAYAIGQ RKRRRIQNRH STIEEHVRWH KTGKTKPVIE NGVRKGWKKI MVLYKRSNRT 180 HKPEKSNWVM HQYHLGAEEV EVGGNYVVSK ISYQQRKQTD KNDGVTRMED SDNSIIRASP 240 RTPKTMTPSP PRPWKSIIYE GDIDEKVHQL DTVEQESKFA AEGSNLPIHG VECEDHLSIM 300 VKNSVKDRVS YAVHDGDVGR KQRCMHLRNF RA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 134 | RKRRR |
2 | 131 | 135 | KRRRI |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017628733.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like | ||||
Swissprot | Q6NQK2 | 3e-85 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A1U8JVH5 | 0.0 | A0A1U8JVH5_GOSHI; NAC domain-containing protein 8-like | ||||
STRING | Gorai.007G075300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5045 | 26 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14490.1 | 2e-95 | NAC domain containing protein 85 |