PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0532
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YB
Protein Properties Length: 209aa    MW: 23921.4 Da    PI: 6.9227
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0532genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB177.21.6e-5543138297
        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                  +eqdrflPianvsri+kkv+P+n+kiskdaket+qecvsefisfvt+easdkcqrekrktingdd++wa++tlGfe+yv plk+yl+kyre+egek
  Gh_A11G0532  43 KEQDRFLPIANVSRILKKVIPSNGKISKDAKETIQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEEYVGPLKLYLSKYREMEGEK 138
                  89*******************************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.6E-5236159IPR009072Histone-fold
SuperFamilySSF471131.71E-4045180IPR009072Histone-fold
PfamPF008085.9E-2748112IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.1E-197694No hitNo description
PROSITE patternPS0068507995IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.1E-1995113No hitNo description
PRINTSPR006154.1E-19114132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEDEIKHGNV THVPNKGSPE SPHVTCCDSN NSNNNNNQNN NNKEQDRFLP IANVSRILKK  60
VIPSNGKISK DAKETIQECV SEFISFVTGE ASDKCQREKR KTINGDDIIW AITTLGFEEY  120
VGPLKLYLSK YREMEGEKLI FPKQQRSDQR RQHSEYEQNI VFNNNNNINI NTNSNNNVYS  180
SINVYPSFVP SDQPFSLPFS SNSFQKQLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4443133292Transcription factor HapC (Eurofung)
4g92_B2e-4443133292Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and green siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016709440.11e-151PREDICTED: nuclear transcription factor Y subunit B-1-like
SwissprotQ9SIT92e-62NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLA0A1U8L4A11e-149A0A1U8L4A1_GOSHI; nuclear transcription factor Y subunit B-1-like
STRINGGorai.007G066100.11e-122(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.19e-61nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]