PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0446
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 455aa    MW: 50706.9 Da    PI: 6.3434
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0446genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS304.52.6e-93534522373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.....fsevsPilkfs 94 
                  ++lL++cA+a++s+d++laq++++ l+++a pdgd++qRl++ f++AL  r a+  s+ +k l++ +++++n s e++ +++     f++++P+++f+
  Gh_A11G0446  53 EQLLVHCANAIESNDATLAQQIIWVLNNIAPPDGDSNQRLTSAFLRALIVRAAK--SGSCKMLAAMANAHRNLSVETHTFSVielanFVDLTPWHRFG 148
                  79****************************************************..6666666666666666555555554445599*********** PP

         GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.......v 182
                  + taN aIleaveg + +Hi+D++ ++++Q p+L++a+a+R egpp +++T+ g p+ +      ++ee+g++L +fA++ +v +ef+++        
  Gh_A11G0446 149 FTTANAAILEAVEGYSVIHIVDLSSTYCMQIPTLIDAIANRFEGPPLVKLTVPGVPKDVpplLDLTYEELGSKLVNFARSRNVMLEFRAVpsthadgF 246
                  *******************************************************99999888999************************99866665 PP

         GRAS 183 akrledleleeLrvkp.gEalaVnlvlqlhrll................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                  a+ +++l+l++L   + gEal++n++++lh+++                 +++s +s r+ +Lk++++l+P++ ++v+++ad++s++++ r+ +a++y
  Gh_A11G0446 247 ASLIDQLRLQHLVYAEaGEALVINCHMMLHYIPeetpsplpntnsnpytFQPTSNPSLRTMFLKALRGLNPTIAILVDEDADLTSNNLVCRLRSAFNY 344
                  66667777777777669******************************998999999999*************************************** PP

         GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                   +  +d++++ lp  s++r+++E+  + ++++nv+a+eg +r+er e++++W +r+++a F+ v++++++a+++k++l +++  g+ +++e++ lvl+
  Gh_A11G0446 345 LWIPYDTVDTFLPIGSKQRQWYEAN-ICWKVENVIAHEGLQRVERVESKSRWVQRMRNAEFRGVSFGDETASEVKTMLDEHA-AGWGLKKEDDDLVLT 440
                  *************************.********************************************************.999************ PP

         GRAS 362 WkdrpLvsvSaW 373
                  Wk++++v+++aW
  Gh_A11G0446 441 WKGHNVVFATAW 452
                  ************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.54526434IPR005202Transcription factor GRAS
PfamPF035148.9E-9153452IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MMQFTGNPSH SLHQIAPFSI PTMNKNQIHQ ARPWPGFPTS KGLASFGDAN CMEQLLVHCA  60
NAIESNDATL AQQIIWVLNN IAPPDGDSNQ RLTSAFLRAL IVRAAKSGSC KMLAAMANAH  120
RNLSVETHTF SVIELANFVD LTPWHRFGFT TANAAILEAV EGYSVIHIVD LSSTYCMQIP  180
TLIDAIANRF EGPPLVKLTV PGVPKDVPPL LDLTYEELGS KLVNFARSRN VMLEFRAVPS  240
THADGFASLI DQLRLQHLVY AEAGEALVIN CHMMLHYIPE ETPSPLPNTN SNPYTFQPTS  300
NPSLRTMFLK ALRGLNPTIA ILVDEDADLT SNNLVCRLRS AFNYLWIPYD TVDTFLPIGS  360
KQRQWYEANI CWKVENVIAH EGLQRVERVE SKSRWVQRMR NAEFRGVSFG DETASEVKTM  420
LDEHAAGWGL KKEDDDLVLT WKGHNVVFAT AWVPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-494745482474Protein SHORT-ROOT
5b3h_B8e-504745428420Protein SHORT-ROOT
5b3h_E8e-504745428420Protein SHORT-ROOT
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016709028.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN221e-179SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A1U8L6L30.0A0A1U8L6L3_GOSHI; scarecrow-like protein 32
STRINGGorai.007G056200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54452750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein