PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G0426 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HSF | ||||||||
Protein Properties | Length: 295aa MW: 33168.9 Da PI: 8.7406 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 118.1 | 5.3e-37 | 10 | 101 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+ ++++isw+eng+sf+v++ +fak++Lp+yFkh+nf+SFvRQLn+YgF+kv +++ weF++++Fk+g+kell++++ Gh_A11G0426 10 FLTKTYKLVDDPITDDVISWNENGTSFIVWNIADFAKDLLPNYFKHDNFSSFVRQLNTYGFRKVVQDK---------WEFANENFKRGQKELLSEMR 97 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Gh_A11G0426 98 RRKA 101 *985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.2E-38 | 3 | 93 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.8E-59 | 6 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.67E-33 | 7 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 3.1E-20 | 10 | 33 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.3E-31 | 10 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.1E-20 | 48 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 49 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.1E-20 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MAQRSVPAPF LTKTYKLVDD PITDDVISWN ENGTSFIVWN IADFAKDLLP NYFKHDNFSS 60 FVRQLNTYGF RKVVQDKWEF ANENFKRGQK ELLSEMRRRK AVTPSPVNGK TSAAGPSSPT 120 KSGEDLGSTS TSSLDSKNPG SVETKQETMN VFSNLSNENE KLKKHNELLS SELAQAKKQC 180 DELVAALTER GKVGPDQFNR IMRQGSYDST RDDDDHGRRY GAGDPDDHDH DDDNENGSQD 240 CNGSLKLFGV WLKGAGKKRF PKEKKIVYGE PYAKQMKTVH FNHAGMRMKS GKVCN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-26 | 6 | 99 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-26 | 6 | 99 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-26 | 6 | 99 | 26 | 129 | Heat shock factor protein 1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.22691 | 0.0 | boll |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR067403 | 0.0 | KR067403.1 Gossypium hirsutum HSF22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017641201.1 | 0.0 | PREDICTED: heat shock factor protein HSF24-like | ||||
Swissprot | P22335 | 1e-104 | HSF24_SOLPE; Heat shock factor protein HSF24 | ||||
TrEMBL | A0A0D2QLX6 | 0.0 | A0A0D2QLX6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G053900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6101 | 25 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 5e-84 | heat shock factor 4 |
Publications ? help Back to Top | |||
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