PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G0405 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 83aa MW: 9358.31 Da PI: 9.0188 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.6 | 7.9e-10 | 15 | 58 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ + + +a +++ + +W+ +a+ +g g++++++k+++ Gh_A11G0405 15 SWTPKQNKTFEKALAKYDQDtpdRWHNVAKAVG-GKSAEEVKLHY 58 7******************9*************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.667 | 8 | 62 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.12E-12 | 8 | 62 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-5 | 10 | 63 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.6E-9 | 12 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.32E-8 | 15 | 58 | No hit | No description |
Pfam | PF00249 | 4.0E-8 | 15 | 58 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence Send to blast |
MSSNFLTNSR CSSSSWTPKQ NKTFEKALAK YDQDTPDRWH NVAKAVGGKS AEEVKLHYDA 60 LVRDLKDIES GRYPYPYPSG SNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-26 | 6 | 76 | 1 | 71 | RADIALIS |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.11870 | 1e-141 | boll| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012457904.1 | 2e-44 | PREDICTED: protein RADIALIS-like 3 | ||||
Refseq | XP_016678633.1 | 2e-44 | PREDICTED: protein RADIALIS-like 3 | ||||
Refseq | XP_017648656.1 | 2e-44 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 3e-32 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | A0A2P5X5Z6 | 1e-54 | A0A2P5X5Z6_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G050400.1 | 2e-55 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 4e-34 | RAD-like 6 |