PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G0358 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 859aa MW: 95505.3 Da PI: 6.7915 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.9 | 4e-23 | 163 | 264 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++ +++a+e+ ++++++ ++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + +++el Gh_A11G0358 163 FCKTLTASDTSTHGGFSVLRRHADEClppldmSLQPPT-QELVSKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKKLVAGDAFIFL--RGENGEL 257 99*****************************9777666.49999*********************************************..449999* PP EEEEE-S CS B3 93 vvkvfrk 99 +v+v+r+ Gh_A11G0358 258 RVGVRRA 264 ****985 PP | |||||||
2 | Auxin_resp | 119.1 | 3.5e-39 | 289 | 371 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha +t+++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp rW++SkWr+Lk Gh_A11G0358 289 AWHAYTTRTIFTVYYKPRTSPAEFIVPFNQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPKRWQGSKWRCLK 371 79*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.23E-39 | 153 | 292 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.3E-40 | 159 | 278 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.48E-20 | 161 | 263 | No hit | No description |
SMART | SM01019 | 2.8E-21 | 163 | 265 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-21 | 163 | 264 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.646 | 163 | 265 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.0E-36 | 289 | 371 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 7.3E-6 | 721 | 770 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 6.38E-13 | 728 | 814 | No hit | No description |
PROSITE profile | PS51745 | 24.292 | 734 | 818 | IPR000270 | PB1 domain |
Pfam | PF02309 | 6.6E-7 | 780 | 819 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 859 aa Download sequence Send to blast |
MTTSEISIKG NCVNGRGDSF SSGYTEPRDT RNTMEGQNGH SARTAAVRET VDPERALYTE 60 LWHACAGPLV TVPREGERVF YFPQGHIEQV EASTHQVSEQ QMPVYDLPPK ILCRVINVQL 120 KAEPDTDEVF AQVTLLPEHT QDENMVDKEP PILEPPRFQV HSFCKTLTAS DTSTHGGFSV 180 LRRHADECLP PLDMSLQPPT QELVSKDLHG NEWRFRHIFR GQPRRHLLQS GWSVFVSSKK 240 LVAGDAFIFL RGENGELRVG VRRALRQQGN VPSSVISSHS MHLGVLATAW HAYTTRTIFT 300 VYYKPRTSPA EFIVPFNQYM ESVKNNYSIG MRFKMRFEGE EAPEQRFTGT IVGIEDADPK 360 RWQGSKWRCL KVRWDETSTI PRPERVSPWK IEHALSPPAL NPLPMPRPKR PRTNAVSSSP 420 DSSVLTREGS SKVTVDPLPA SSFSRVLPGQ EFSTLRGTFA ESNDSDTADR SVMWPPSIDD 480 EKVDVAHGER KFGSENWMPS RRHEPTYTDL LSGFGSNADT SRGYYPSFVD QTSVAGNSGK 540 KQLLDQEGKL GAWSLLPSGL SLKLSDSSTD PPLQGSDVPY QARGNGRFCG FGDYPILEGR 600 RIECTRGNWL MPPPSTSCYD NSVHSRDLMP KTSLVQEHKN GKSREGNCKL FGIPLISISS 660 ASGPAVSHIS AFAKPVGHMQ AALHQIHALK SDKRSENSNA SQMAEDVSAF NEQEKMGQPH 720 AREFQSKPST ASTRSCTKVL MQGTALGRSV DLTKFNNYDE LIAELDQLFE FGGELMAPQK 780 NWLVVYTDDE GDMMLVGDDP WQEFCAMVRK IGIYTREEVQ KMKPGSLGSK FEDIPVPSEG 840 TVAKEVNCPS ASSAKNCSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-178 | 56 | 392 | 18 | 353 | Auxin response factor 1 |
4ldw_A | 1e-178 | 56 | 392 | 18 | 353 | Auxin response factor 1 |
4ldw_B | 1e-178 | 56 | 392 | 18 | 353 | Auxin response factor 1 |
4ldx_A | 1e-178 | 56 | 392 | 18 | 353 | Auxin response factor 1 |
4ldx_B | 1e-178 | 56 | 392 | 18 | 353 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.17769 | 0.0 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. Expressed in developing siliques. {ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078, ECO:0000269|PubMed:15960614}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016709650.1 | 0.0 | PREDICTED: auxin response factor 2-like | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A1U8L4V3 | 0.0 | A0A1U8L4V3_GOSHI; Auxin response factor | ||||
STRING | Gorai.007G044900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5348 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |