PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0357
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 564aa    MW: 62236.5 Da    PI: 6.9238
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0357genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11379421754
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Gh_A11G0357 379 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 421
                  79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58372421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-16375438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14378427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-9378421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15379433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.56E-12379425No hitNo description
CDDcd048731.63E-6492533No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MLSRVNSGLV WMEGTKEDEH SSSWNRTNGN NNNNNNSVIM ENKEMMGSSL SSFKSMLDDE  60
WYVPNNGISS HHDIRELSFS PNLGDHQDNL LLHHHHQQQQ QQRPVDQQQQ QQRPVDSSSS  120
CSPSSSVFNN IDPSQVQFFL QPKPSLSSFL NVVSNNPLDH GFDLGEIGFL DNQATTNATA  180
LLNREHTGVL GGFTDLSPGN QLDTANSCPE TQFSGSRVVQ LTENGGGFAG FQGFNENPGN  240
PLFLNRSKLL RPLDSFPSVG AQPTLFQKRA ALRKNLADNG GNYGVLSGGN INAPSGTEGD  300
KGKKEMNKEN EKKKIYNRDE LEDVSIDGSA LNYDSDEFTE NNKVEEALKN GGNTSNANST  360
VTGGDQKGKR KGLPAKNLMA ERRRRKKLND RLYMLRSVVP KISKMDRASI LGDAIEYLKE  420
LLQRINDLHN ELESNPGSSS LTPTTSFHPL TPTPATLPCR IKDELCPSSL PSPNGQPARV  480
EVRLREGKAV NIHMFCGRRP GLLLSTMRAL DSLGLDIQQA VISCFNGFAM DIFRAEDKLL  540
MTAAFGPPPH PIMTRARWSV LHDK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368386KRKGLPAKNLMAERRRRKK
2380387ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.228930.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7514260.0KC751426.1 Gossypium hirsutum bHLH transcription factor (bHLH2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489049.10.0PREDICTED: transcription factor ICE1-like
TrEMBLA0A0D2T8U70.0A0A0D2T8U7_GOSRA; Uncharacterized protein
STRINGGorai.007G044800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19522782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-110bHLH family protein