PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0344
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 354aa    MW: 39628.9 Da    PI: 9.2342
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0344genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.52.5e-4074151178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +C v++C++dls++++yhrrhkvCe hsk+++v+++gl+qrfCqqCsrfh+l+efD++krsCr rL++hn+rrrk+q+
  Gh_A11G0344  74 VCLVDECNTDLSNCRDYHRRHKVCELHSKTAEVMINGLKQRFCQQCSRFHSLEEFDNGKRSCRARLDRHNRRRRKPQP 151
                  6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-3270136IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.68472149IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.27E-3773154IPR004333Transcription factor, SBP-box
PfamPF031102.9E-3075148IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MESLSVIQWL EKRKQLFLFV CNWDFRVDLK LGQVGNSGEL PSNKWKEPRV LKMESSSSSS  60
KKARPTNIGT HPVVCLVDEC NTDLSNCRDY HRRHKVCELH SKTAEVMING LKQRFCQQCS  120
RFHSLEEFDN GKRSCRARLD RHNRRRRKPQ PDPLSHSRSY FSNYQGSQML PFSSLQVYPS  180
TSVVKTIWPE SRYLNLKQPP AKQNLLLGSS SSNYREGKQQ CSFLQGKNQT PAKASICQPV  240
LGRVAPFSEG NGGCQSMLCD RLTTQVRDSD CALSLLSSPL SHTSGIGLSN MVQPQSFPLV  300
QSLGPSLQDH IIEPMGSVVA NGWETTVHGS GMFHMGSGGS SASEPPENLG FHWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-27741481084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131148KRSCRARLDRHNRRRRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.239480.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223260.0KJ622326.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016710077.10.0PREDICTED: squamosa promoter-binding-like protein 13A
TrEMBLA0A1U8L6380.0A0A1U8L638_GOSHI; squamosa promoter-binding-like protein 13A
STRINGGorai.007G043500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41112759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.16e-51SBP family protein