PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0327
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 486aa    MW: 52872.1 Da    PI: 4.9416
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0327genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.81.5e-12143165426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  e+C ++++tG Ck+G++CkF+H+
  Gh_A11G0327 143 ENCAYYMKTGLCKFGSNCKFNHP 165
                  89********************9 PP
2zf-CCCH30.56.1e-10188213227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++ +C++++rtG Ck+G  C+++H++
  Gh_A11G0327 188 GQTECKYYLRTGGCKFGKACRYNHSR 213
                  6789********************95 PP
3zf-CCCH39.41e-12234258226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++++C++++r+G CkyG++C+F+H+
  Gh_A11G0327 234 GEKECPYYMRNGSCKYGANCRFNHP 258
                  6789********************9 PP
4zf-CCCH22.32.2e-07377398627
                  -SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                  C++f++tG Ck+ ++Ck++H++
  Gh_A11G0327 377 CSYFLKTGDCKFKSNCKYHHPK 398
                  ********************96 PP
5zf-CCCH36.11.1e-11419444227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C++++r+G+Ck+G+ CkF H++
  Gh_A11G0327 419 DQSICSHYSRYGICKFGPACKFDHSM 444
                  6789********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.1E-6139167IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.126139167IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-10143165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5145164IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-5186213IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.652186214IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-8188213IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5189214IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4192213IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004232260IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6232259IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10234258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6234260IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5238257IPR000571Zinc finger, CCCH-type
SMARTSM003560.011371398IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258371399IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5376400IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-5377398IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6415443IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.305417445IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4417444IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-9419443IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4421444IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MSQSEEAPIS DTTAPADSAL NTLGHRSPDS DPTPNPDASP TPSDLNRAAE ETGHDESNLE  60
QQLQDLDLKE EEEEEVAAAA AAAAAETKDD GERKGDNDYN EADAGAAGDK EDEEEKNENE  120
NDGENGKRFE GVRSHYPVRP DAENCAYYMK TGLCKFGSNC KFNHPVRRKN QGVQEKLKEN  180
DESTEKPGQT ECKYYLRTGG CKFGKACRYN HSRAKSSTDP ILELNFLGLP IRQGEKECPY  240
YMRNGSCKYG ANCRFNHPDP TTTGACAPPA AYGNGGSVSS QAASQVNMAS WSSPRALNET  300
ATATFMPIMF SPTPGVPPPN PEWNGYQATI YPPPERILHP TPAYVMSSPS TETTVYTQNQ  360
PQMVVDEFPV RPGQPGCSYF LKTGDCKFKS NCKYHHPKNR FAKPAPCALS DKGLPLRPDQ  420
SICSHYSRYG ICKFGPACKF DHSMQAAPST AVSELEQPPS FSHSAPLEQT GIAGSNGTDT  480
AVQQPV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.27870.0boll| ovule| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016710348.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like
SwissprotQ9STM41e-136C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A1U8LAF00.0A0A1U8LAF0_GOSHI; zinc finger CCCH domain-containing protein 67-like
STRINGGorai.007G041600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-127C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]