PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0231
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 706aa    MW: 78825.5 Da    PI: 7.0236
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0231genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.21.3e-22130231198
                  EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+kvlt sd++++g +++ +k+a+++     +++ + +++l+ +d++g +W++k+i+  ++++r++lt+GW+ Fv +++L +gD++vF   + +++el
  Gh_A11G0231 130 FCKVLTASDTSTHGGFSVLRKHATDClpkldMNDATPTQELVAKDLHGYEWRFKHIFrAGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGENGEL 225
                  99****************************9555555669****************98888999*************************..449999* PP

                  EEEEE- CS
           B3  93 vvkvfr 98 
                  +v+v+r
  Gh_A11G0231 226 RVGVRR 231
                  ****98 PP
2Auxin_resp1041.9e-34257336183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha+st++ F v+Y+Pr+  s+F++ ++k+++al++k++vGmRfkm+fe+eds+err+sGt+vgv+d++p  W++SkWrsLk
  Gh_A11G0231 257 ASHAVSTQTLFVVYYKPRT--SQFIIGLNKYLEALSNKFAVGMRFKMKFEGEDSPERRFSGTIVGVEDFSP-LWKDSKWRSLK 336
                  789***************6..9*************************************************.9********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-38122246IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.15E-38123260IPR015300DNA-binding pseudobarrel domain
CDDcd100176.23E-17128225No hitNo description
PROSITE profilePS5086312.097130233IPR003340B3 DNA binding domain
SMARTSM010193.4E-22130233IPR003340B3 DNA binding domain
PfamPF023629.8E-21130231IPR003340B3 DNA binding domain
PfamPF065079.4E-32257336IPR010525Auxin response factor
PfamPF023094.2E-7566622IPR033389AUX/IAA domain
PROSITE profilePS5174527.884586667IPR000270PB1 domain
SuperFamilySSF542773.97E-14586662No hitNo description
PfamPF023099.2E-7632671IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MMANRVESFS QTNNVSSEGN GCDDLYMELW KLCAGPLVEV PRAEQRVYYF PQGHMEQLEA  60
STNQTLNQRI PLFNLPSKIL CRVVHIQLLA EKETDEVYAQ VTLLPEPSQS EPTTPDLCPP  120
ESQRPTVHSF CKVLTASDTS THGGFSVLRK HATDCLPKLD MNDATPTQEL VAKDLHGYEW  180
RFKHIFRAGQ PRRHLLTTGW STFVTSKRLV AGDSFVFLRG ENGELRVGVR RVVRQHSIMP  240
SSVISSQSMH VGVLATASHA VSTQTLFVVY YKPRTSQFII GLNKYLEALS NKFAVGMRFK  300
MKFEGEDSPE RRFSGTIVGV EDFSPLWKDS KWRSLKVQWD EPASIPRPDR VSPWEIEPFA  360
APIPPSLTQP VAAKNKRPRP PAEIPATDLS STTSAPYSGV THCHDLTPQN IAAEAKGNEN  420
PVMGHHMWTE MSSGCSSVVK TLNKGSWLSS PGTCVPHHLF PEAREDKTRF SAWPVPSGFS  480
NPQLNEDSTF DSTEKAKRSE TSASCRLFGI DLINHSASST PLERTPAQLS TMIMGITEVP  540
GPSNLSSTYS DQKSEISKDS KEKKLEQLQL SAKENQSMQS CSSFTRSRTK VQMQGIAVGR  600
AVDLAMFEGY DQLIDELEEM FDIKGELRPR NKWEIVYTDD EGDMMLVGDD PWPEFCNMVR  660
RIFICSSQDV KKLKTGSKLP LASIEGEGTL YFGLRHIAGK RSGLLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-17293591355Auxin response factor 1
4ldw_A1e-17293591355Auxin response factor 1
4ldw_B1e-17293591355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1375379KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.221330.0boll| ovule| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5850151e-31JX585015.1 Gossypium hirsutum clone NBRI_GE18462 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606693.10.0PREDICTED: auxin response factor 9-like isoform X1
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A0D2SCX50.0A0A0D2SCX5_GOSRA; Auxin response factor
STRINGGorai.007G026900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27642762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9