PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0139
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 216aa    MW: 25471.3 Da    PI: 6.0515
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0139genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-183689356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 ++++ft++q++ Le+ Fe++ ++  +++ + A++lgL+ rqV++WFqNrRa+ k
  Gh_A11G0139 36 NKRRFTDDQIRLLESIFESETKLEPRKKLQVARELGLQPRQVSIWFQNRRARLK 89
                 5679************************************************98 PP
2HD-ZIP_I/II117.76.3e-3836127293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +krr++++q++lLE+ Fe+e+kLep++K ++areLglqprqv +WFqnrRAR k+kq+Ekdy +L+++yd+l+++ e+L++e++ L +++++
  Gh_A11G0139  36 NKRRFTDDQIRLLESIFESETKLEPRKKLQVARELGLQPRQVSIWFQNRRARLKSKQMEKDYVTLRDNYDKLVSRFEMLKEEKQCLISQMEK 127
                  79************************************************************************************999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.88E-181992IPR009057Homeodomain-like
PROSITE profilePS5007117.3623191IPR001356Homeobox domain
SMARTSM003891.5E-163495IPR001356Homeobox domain
PfamPF000465.2E-163689IPR001356Homeobox domain
CDDcd000862.27E-143792No hitNo description
Gene3DG3DSA:1.10.10.602.8E-183797IPR009057Homeodomain-like
PRINTSPR000311.6E-56271IPR000047Helix-turn-helix motif
PROSITE patternPS0002706689IPR017970Homeobox, conserved site
PRINTSPR000311.6E-57187IPR000047Helix-turn-helix motif
PfamPF021831.0E-1391132IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
METRDHHHPS SNELILQQYS QAPPPGKNNS NNSSSNKRRF TDDQIRLLES IFESETKLEP  60
RKKLQVAREL GLQPRQVSIW FQNRRARLKS KQMEKDYVTL RDNYDKLVSR FEMLKEEKQC  120
LISQMEKLSE MLAESETNGV NKVSKVGSTE HEAEPGSSFK QEDDGVLGLE TQKGHREIED  180
AVKHGDEFLS MDEYRDYDDQ FDHLCSRWHH WLNFWT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18391RRARLKSKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5843091e-135JX584309.1 Gossypium hirsutum clone NBRI_GE17582 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016708978.11e-161PREDICTED: homeobox-leucine zipper protein ATHB-7-like
TrEMBLA0A1U8L6G61e-160A0A1U8L6G6_GOSHI; homeobox-leucine zipper protein ATHB-7-like
STRINGGorai.007G016800.11e-145(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17513810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.16e-43homeobox 7